Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242834g00001 ATGATTAACAACCTCATTGCGGTTGGTCCATGGCTTATCACCGAATCCATCACTCTTGAACCCAACCCCGGTGCTTGGAACAATCTCTTCGGCCTTCTCTTTCTTGATAACCCCATTGGCACTGGATTCAGTATAGCCTCATCGCCGCAAGAAATCCCAACAGATCAAGAAGGTATTGCCAAACACCTTTATGTTGCCATTACAAGGTTTCTTCGACTTGATCCTGTTTACAAACACCGCCCTATTAATATCATTGGCCAAAGCTATGGCGGAAAGTATGCTTCTACAACTGGATATTTTATATTGAAAAGAAATGCAGAGTTGCATCCTTCTCAAAGAGTGAATTTGGTTGGTGTGGTTATTGGGGATGGGATAATTGAGCCTGTGACTCAAGCAGGCACGCAACCTGCTAATGCTTATTACGTGGGTTTGATCAATGAGAAGCAAAAGAGTGAGTTTGAGACAGATCAATTGGAGATAGTTAGGTTGACGCAGATTCAGAATTGGAATGAAGCAGATACTGAATGGAGTGGAGTCCAGGAGAAGATCCAAAACATATCAGGGTGGAAATCATTGAAAGACTACACACTGAAAGGTAATACTGTTAACTATATAGCTCGGGTTACTCAATTCTTGAACATGGCTGAGGTGAAGAAGGCACTGGGAGTGAACGAATCTCAAGTGTTTGAAGCTAAGAGCAGTGAGGTAAGGACAGCGTTGCAGGGTGATATAATGAAGAGTGTCAAGTTTAGGGTAGAGGAGTTGTTGAGGATCAACACTACTAGAGTGTTGTTGTACCAAGGTCAATATGATTTGCTTGGTGGTCCAGTGCAAACTGATGCGTGGGTGAAGACTATGAAATGGGAAGGGATTGAGGAGTATATGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGCTTGCTGGCTATGTCCAACAATGGAAGTCACTCACCAATGTTGTGGTGTTAGGAGGTGGCCATCTTATGCCTCTTGACCAGCCTGTTATTGCTCAGGCAATGATACAAGATTGGATCTTGCAAAGGGGTACCTTTGGAAATTCGCCTTCTTTTAGTTCCATTTGA 1086 0.4328 MINNLIAVGPWLITESITLEPNPGAWNNLFGLLFLDNPIGTGFSIASSPQEIPTDQEGIAKHLYVAITRFLRLDPVYKHRPINIIGQSYGGKYASTTGYFILKRNAELHPSQRVNLVGVVIGDGIIEPVTQAGTQPANAYYVGLINEKQKSEFETDQLEIVRLTQIQNWNEADTEWSGVQEKIQNISGWKSLKDYTLKGNTVNYIARVTQFLNMAEVKKALGVNESQVFEAKSSEVRTALQGDIMKSVKFRVEELLRINTTRVLLYQGQYDLLGGPVQTDAWVKTMKWEGIEEYMNAERKIWKVNGELAGYVQQWKSLTNVVVLGGGHLMPLDQPVIAQAMIQDWILQRGTFGNSPSFSSI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242834g00001 361 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 335 IPR001563 GO:0004185|GO:0006508
Stsc242834g00001 361 Pfam Serine carboxypeptidase 5 347 IPR001563 GO:0004185|GO:0006508
Stsc242834g00001 361 Gene3D alpha/beta hydrolase 1 353 IPR029058 -
Stsc242834g00001 361 SUPERFAMILY alpha/beta-Hydrolases 3 347 IPR029058 -
Stsc242834g00001 361 PRINTS Carboxypeptidase C serine protease (S10) family signature 318 331 IPR001563 GO:0004185|GO:0006508
Stsc242834g00001 361 PRINTS Carboxypeptidase C serine protease (S10) family signature 22 34 IPR001563 GO:0004185|GO:0006508
Stsc242834g00001 361 PRINTS Carboxypeptidase C serine protease (S10) family signature 35 45 IPR001563 GO:0004185|GO:0006508
Stsc242834g00001 361 PRINTS Carboxypeptidase C serine protease (S10) family signature 70 95 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242834g00001 Stsc-Chr242834 1281 2475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242834g00001 204 346 Calmodulin-binding Proteins AT2G22960 24.306 8.08e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242834g00001 K09645 - gmx:100780822 451.44