Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242831g00003 ATGGAAATGAATGATGAGAACTCTCTCAAACTCTTTAGCTTCAATGCCTTCAATAAAACACACCCTCCTGAAAATGAATACTGGGATCTATCAAAAAGGGCACTTGCTTATGCCAGAGGAAATCCTTTAGCTTTGAAAGTTTTGGGATCATTTCTCCATTCCAAAAGTGAAAAGGAATGGGATAATGCACTAACAAAACTAAAATGGATCCCTAATGCAGATATTCAGAAGGTGTTGAGGTTGAGTTTCAATGAATTAGATGAGACAGAGAAGGATATATTCTTAGACATTGCATGCTTTTTCAAAGGAGAAGAGAGAGAAAAAGTAGCTAGGATATTAAATGAGTGTGGCTTCTATGCAGATATTGGAATAAGAAATCTTTTAGACAAGGCTCTTATATCAATATCTACCAATAAAAGCATACAGATGCATGACTTGATCCAGGAAATGGGTCATAAAATTGTGTGCGAAGAATCTCCCAAGAACCCTGGAAAGCGAAGCAGAGTATGGCATCCAGATGAAATATGCGAGATATTAAAAAATGATATGGGGTCCGCTACGATTGAAACCATATATTTAGATATGACTCGGCGGGCAGAAATATGTATAAGCTCCAATGCATTAAAAAAGATGCCAAAACTAAGGTTACTTGCTTTTGATACCGGCGATATGGATTATGGGAGAAAGAGAGTTGATTATACTTTGAGTCTTCCAACAAATCTGGAGTTGCCTAATAACTTGAAATATATTAAATGGGATGGATGTCCATTAAAATCTCTATCAATCACTTCATGGCCTAGCAAGCTTGTTGAACTCTCTATGCCATATAGTGATGTTGAAAAGCTTTGGGATGGAACCCAGGATTTTCCAAGTTTGGAGCTAATTTATCTGACTGGTTCAAAACAACTGATTGAGTGTCCAGATTTATCTGGTGCCCCAAATCTGAGACAAGTGTGGGTAAATGGTTGTGACAAATTAGTTCATCTTCACCCTTCTATTCTGTCTCTTCCAAAGCTTGAAGGTTTATGTGTGTTTGGATGCAAAGAACTTAAGAGCCTTTCTTGTACCACTTGTTCACCATCTCTTAGAGATGTTGTTGCTTATGGTTGCCCAAATCTGAGTGAATTCTCAATCCCAATGGCAAAGGATCATTCTCATATTAATCTCCATTTGAGGTCAACTGCCTTAAAACAATTACCTCCTGAAATTCTGCATTTTAAAAATCTTGATAACTTCTCTTTTCCAATCAGTGATCTCCTGATGGATCTTCCTGAAAAGTACACCAATCAAATCATGCTTTCAGACCCTAACAATCCTGAATGTGACTCAGTGGCCACCTTACGCCGCATACTGCCCAGCCCTATGTTCCATTATCTAAGAGAATTGAAATTTGATGGATGCCAAAGCTTGACTGAACTCCCAGACAACATCTCTTTGTTATCATTATTGTCATTCTTAGCCCTCCATAACACTAATGTCATGATCTTTCCAGAAACCATTAAGACTCTTTCGCGGCTCAGGCGTGTTACAATTTGTCACTGTGAAAGGTTACAGGCTCTACCAGCACTTCCACCTTCAGTTCATAGCTTAAAGCTTTGGGATTGCAAATCTTTGAGGAAAGTGTCAAGTTCCACAGAGCAACAAAAGAGACAGCATGCTACTACTTTTACATTTCTGAACTGCATGAAGTTGGATGAAGAGTCATACACTACCATTTTGAAAGATGCCATTGCAAGGGTGGAATTTAGGGCTAAAGCACAGCAACTATCAGCAGGCCTAGAAGAAAGCAAGAAAGAAGAATGCACTAACACTGTTGATGATGATTTTGCTGATGACTTTATTTATGAGCAGAACAAGAATGTTGGTAAGATTTGTTATTTCTTGCCAATCACAGGGAGTAAAGTTGGTGACTTATTGTTCCATGATTCTTGTGCACAAAAGTCCATCACTATTCAAGTTCCACAACTTTCCAATTTCTTTGGTTTCATATTCTACTTGGTTGTTCCTCCAATACAACCATGTGATGTGGGCGACGAAGAACTTGAGATTTTGTTTGGATTTGAAAGTTACTTGGAAACAAGTTGGGGTGAAAGGACTCATATAGCAAGTTCATGCTCAATAACATGGAACTGCGAGTTTTACCATGGATTCAAGCTGAATGTTATGTCGGATCATGTGTTATTATGGTATGATTCGGAATGCTGTAAGCGGATAATGGAAATTATTGAAGGAAGAAAGGCTTCTGATGATAATGATGATGAGCAGAATGCAAATCTGACAGTTAAGTTCCTTGCTCGCTTACCAACCAAGGAGGAAGTGGCAATTAAAGCTTGTGGCATCCGTTGGATATATCCAAATATGGAGGATGATGAATCAAGAAGGTGTAGATTCAAGAGAAGGAGGAAAGATTTCGAGTTAGAAGCCATTGCATCTGGAAATAAAGAAAAGGGACTGGATTCTGATGATGATGGTGAAGAACTAGTTCCTCCAACAAAGAAATTTAAGCATAGTTTCTTGGAAGCTCCCTCAATCCTTCAAGTTGAATCAATAGAAGACTTGAGGTAA 2565 0.384 MEMNDENSLKLFSFNAFNKTHPPENEYWDLSKRALAYARGNPLALKVLGSFLHSKSEKEWDNALTKLKWIPNADIQKVLRLSFNELDETEKDIFLDIACFFKGEEREKVARILNECGFYADIGIRNLLDKALISISTNKSIQMHDLIQEMGHKIVCEESPKNPGKRSRVWHPDEICEILKNDMGSATIETIYLDMTRRAEICISSNALKKMPKLRLLAFDTGDMDYGRKRVDYTLSLPTNLELPNNLKYIKWDGCPLKSLSITSWPSKLVELSMPYSDVEKLWDGTQDFPSLELIYLTGSKQLIECPDLSGAPNLRQVWVNGCDKLVHLHPSILSLPKLEGLCVFGCKELKSLSCTTCSPSLRDVVAYGCPNLSEFSIPMAKDHSHINLHLRSTALKQLPPEILHFKNLDNFSFPISDLLMDLPEKYTNQIMLSDPNNPECDSVATLRRILPSPMFHYLRELKFDGCQSLTELPDNISLLSLLSFLALHNTNVMIFPETIKTLSRLRRVTICHCERLQALPALPPSVHSLKLWDCKSLRKVSSSTEQQKRQHATTFTFLNCMKLDEESYTTILKDAIARVEFRAKAQQLSAGLEESKKEECTNTVDDDFADDFIYEQNKNVGKICYFLPITGSKVGDLLFHDSCAQKSITIQVPQLSNFFGFIFYLVVPPIQPCDVGDEELEILFGFESYLETSWGERTHIASSCSITWNCEFYHGFKLNVMSDHVLLWYDSECCKRIMEIIEGRKASDDNDDEQNANLTVKFLARLPTKEEVAIKACGIRWIYPNMEDDESRRCRFKRRRKDFELEAIASGNKEKGLDSDDDGEELVPPTKKFKHSFLEAPSILQVESIEDLR 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242831g00003 854 Pfam Leucine Rich Repeat 268 287 IPR011713 -
Stsc242831g00003 854 SUPERFAMILY L domain-like 190 550 - -
Stsc242831g00003 854 SUPERFAMILY "Winged helix" DNA-binding domain 74 180 IPR036390 -
Stsc242831g00003 854 Pfam NB-ARC domain 4 71 IPR002182 GO:0043531
Stsc242831g00003 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 97 IPR027417 -
Stsc242831g00003 854 Gene3D - 2 87 IPR042197 -
Stsc242831g00003 854 Gene3D Ribonuclease Inhibitor 179 384 IPR032675 -
Stsc242831g00003 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 539 IPR044974 GO:0006952
Stsc242831g00003 854 Gene3D Ribonuclease Inhibitor 385 591 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242831g00003 Stsc-Chr242831 16126 18873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242831g00003 27 506 WRKY Transcription Factor Family AT4G12020 31.772 6.96e-54 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242831g00003 - - ahf:112777814 1346.26