Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242828g00006 ATGGCTACTATCCTTTGGCACTTTGTTTTGGTCATTGTGATTGCCACCCTTTTCACTCCAAACTCTACTTGCGCCAAGAAATCCAAAATAATTGGCATGAAAATGAACATGATTGATCAATGTTGGAGATGGAATCGCCAATGGAGGAGCCAGCGAGCGCAACTCGCCAACTGCTCCATTGGCTATGCAGGCAAGATGATAAACAACATTGCCAATAATAATCTCATCTATTATCAAGTTACTGACCCTACTGATGACCCCATAAATCCTAAGCTTGGTACCTTGCGTTACGGAGCTTCAATGATTCAACAGAAAGTTTGGATTACATTTAAAACAGATATGCAAATTACATTGTCCAAACCCCTCCTCATTAGTAGCTTTACCACCATTGATGGTCGTGGAAGCAATGTCCACATTGCTCACAATGCATGCTTCATGATCTTCAAGCCAACCAATGTAATAATCCACAACATCCGCATCCATCATTGTAAATCACAAGGTCCTGGAATGGTGGTGGGTCCAAATGGGAAGGTAATTTCATTGGGTCAAGTTGATGGTGATGCAATTAGACTAGTGACTGCTTCAAAGATTTGGATTGATCACAACACACTTCATGATTGTGAAGATGGTCTTCTTGATGTTACACGTGGCTCCACTGATGTTACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGCCATGACGATGGATATATTAGAGACCAGAACATGAAAGTTACCGTTGTCTACAATCATTTTGGACCCAATTGTAACCAAAGCATGCCAAGGATCCGCCATGGATATGCACATGTAGCAAACAATCTTTACCAGGGATGGATGCAATATGCCATTGGTGGAAGCAAAGAACCTAGCCTCAAAAGCCAATCTAACCTCTTCATAGCACCCAAATCCGGAAATAAGGAGGTGACATGGAGAGAAAGCAGTAACGAAGAAAATGGGGATAGATGGGAATTCCATTCGGTAGGAGATGTTTTTGAAAATGAAGCATGTTTTACAGCAACAAAAGGAGGACGTGTGCCAAAACCCAATTACAGTGAGGAACAACGTTTTAACGTTCTTGATGCCAAGTCTGTTAGATTTTTGACAAAATCATCTGGTGTACCACGATGCAAAAGAGCTATATGCTGA 1164 0.4141 MATILWHFVLVIVIATLFTPNSTCAKKSKIIGMKMNMIDQCWRWNRQWRSQRAQLANCSIGYAGKMINNIANNNLIYYQVTDPTDDPINPKLGTLRYGASMIQQKVWITFKTDMQITLSKPLLISSFTTIDGRGSNVHIAHNACFMIFKPTNVIIHNIRIHHCKSQGPGMVVGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQSMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRESSNEENGDRWEFHSVGDVFENEACFTATKGGRVPKPNYSEEQRFNVLDAKSVRFLTKSSGVPRCKRAIC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242828g00006 387 SMART amb_all 113 310 IPR002022 -
Stsc242828g00006 387 Pfam Pectate lyase 123 304 IPR002022 -
Stsc242828g00006 387 SUPERFAMILY Pectin lyase-like 32 378 IPR011050 -
Stsc242828g00006 387 Gene3D - 35 380 IPR012334 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Stsc242828g00006 387 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Stsc242828g00006 387 PANTHER PECTATE LYASE 18-RELATED 32 383 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242828g00006 Stsc-Chr242828 11954 13317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242828g00006 66 314 Polysaccharide Lyase AT5G09280 69.076 6.44e-135 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242828g00006 K01728 - gmx:100780437 596.66