Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242828g00005 ATGCGTCTCTTTTTCCTCTTCATCTTCATAGTCATCATCATCTTCACCAACTCATGTCTGATAAAGGGGCAGCAACCTTACATTGGTTTAGGGACAGTGGCATGTCCTAGAAGGGGTAACACAAAATCAATCCGAGGCTACACTTGCAACGGTTTGAACCACAGTTGCCAAGCTTACCTCACATTCAGATCCCAACCACTCTACAGTTCAGTCTCCACAATCTCCTCTCTCTTAAACTCTGACCCTTCACAACTCGCTCTCATCAACTCCGTTTCCTTAAACGAAACCTTCCAACCAAACACGCTGGTCATTGTTCCCGTTAACTGCTCCTGTGCCTCTGAGTATTACCAATCAAACACCTCCTATGTTGCCCACAATGCTGAAACCAACTTCTTGATTGCCAACAACACCTTCCAAGGACTCTCCACCTGTCAAGCTTTGGAGCACCAGAATGCCAACCCTTCTGACATATACCCTGTAAGGAAACTTCTTGTTCCTCTTAGATGTGCTTGTCCCACAAGGAATCAAACTCTCAAAGGTGTTAGGTACCTCTTGAGTTACCTTGTTGATTGGGGTGATTCTGTTTCTGCCATTAGTCAAATGTTCAATGTCACTACTCCGATTACTCTTGAGGCTAACTCCCTTATTATGATGAGTTCTGTCATCTATCCCTTTACCACTATTCTAGTCCCTCTTCATGATAAGCCCTTCAATCTTCGAACTTCGCCACCATCTCAAACACCTTCCTCTTCTTCTTCTTCTTCTTCTGGTTCAACAGATAAAAGCTCAAAGAAAACATGGGTTTATGTTGTTGTTGGAGTTGTTGGTGGCTTTGCCTTAATATTTGTTACCTGTGCTGTCATTTTCTTCGCATGCACTCGCAAAACTAAGAGGAAACAAGAGGCTGTTACAGTTTCCAAGAGTTTTGAGGCAATTGAGAAGCCACAAGGGAAGATCATGGAGCAAGGATCAGGAAAATTGTCTGAGATCATAGCTAGCATAGCTCAATCTTTCAAGGTGTACGATTTTGAGGAATTGCAGCGTGCAACGGACAACTTCAGCACAAGTTGCTGGATCAAAGGATCGGTTTATCGTGGAGTTATCAATGGTGATCTTGCAGCAATTAAGAAGGTAGAAGGAGATATCTCAAAGGAGATTCAAGTTCTGAACAAAGTCAACCATTCCAATGTTATACGCCTCTCCGGGGTCAGCTTCTACCATGGCCAATGGTATCTTGTTTATGAGTATGCTGCTAATGGAGCCTTGAGTGATTGGATCTACTTGGACAACGTTGATGGCAAGGTTCTAAGTTGGAGGCAGAGGATTCAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGCTTCACTTCTCCTCCATATATTCACAAGGATCTCAAGTGCAGCAACATTCTTTTGGACAGTAATTTAAGGGCAAAGGTTGCAAACTTTAGCCTTGCAAGGTCTATGGAAGGAGAGAAAGGTCAATTTCCAATGACAAGGCATATTGTAGGGACAAGGGGTTACATGGCCCGTGAGTATTTAGAGAATGGTGTTGTATCCACAAAGCTTGATGTGTATGCATTTGGGGTTCTGGTGCTAGAAATCCTCACTGGAAAAGAGGTTGCTGAAATCTTGAATGAAGATGATGATAACAATAAGGGTTTGTCAAATGCTTTGAGTGTTATACTTGGTGAGGAAAGTGGGATGGAGAGGGTGAAGGAGTTTATGCATGCTTCTCTTCAAGGGAATTATCCATCAGAACTTGCTATGGTTGTGATCAGAATGATCCATAGTTGTATAATGAAAGAACCAGAAAATAGACCACAGATGCAGGAGATTGTTGCATCTCTGTCTAGAATACTGAACTCTTCATTGAATTGGGAAACCTCAGTGAGCATCTCAGCATCCCAAAGCTTTTGA 1929 0.4277 MRLFFLFIFIVIIIFTNSCLIKGQQPYIGLGTVACPRRGNTKSIRGYTCNGLNHSCQAYLTFRSQPLYSSVSTISSLLNSDPSQLALINSVSLNETFQPNTLVIVPVNCSCASEYYQSNTSYVAHNAETNFLIANNTFQGLSTCQALEHQNANPSDIYPVRKLLVPLRCACPTRNQTLKGVRYLLSYLVDWGDSVSAISQMFNVTTPITLEANSLIMMSSVIYPFTTILVPLHDKPFNLRTSPPSQTPSSSSSSSSGSTDKSSKKTWVYVVVGVVGGFALIFVTCAVIFFACTRKTKRKQEAVTVSKSFEAIEKPQGKIMEQGSGKLSEIIASIAQSFKVYDFEELQRATDNFSTSCWIKGSVYRGVINGDLAAIKKVEGDISKEIQVLNKVNHSNVIRLSGVSFYHGQWYLVYEYAANGALSDWIYLDNVDGKVLSWRQRIQIALDVATGLDYLHSFTSPPYIHKDLKCSNILLDSNLRAKVANFSLARSMEGEKGQFPMTRHIVGTRGYMAREYLENGVVSTKLDVYAFGVLVLEILTGKEVAEILNEDDDNNKGLSNALSVILGEESGMERVKEFMHASLQGNYPSELAMVVIRMIHSCIMKEPENRPQMQEIVASLSRILNSSLNWETSVSISASQSF 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242828g00005 642 SMART serkin_6 358 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242828g00005 642 Gene3D Transferase(Phosphotransferase) domain 1 418 638 - -
Stsc242828g00005 642 Gene3D Phosphorylase Kinase; domain 1 327 416 - -
Stsc242828g00005 642 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 633 - -
Stsc242828g00005 642 SUPERFAMILY Protein kinase-like (PK-like) 335 620 IPR011009 -
Stsc242828g00005 642 MobiDBLite consensus disorder prediction 240 261 - -
Stsc242828g00005 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Stsc242828g00005 642 FunFam PTI1-like tyrosine-protein kinase 3 417 634 - -
Stsc242828g00005 642 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Stsc242828g00005 642 Gene3D LysM domain 170 238 IPR036779 -
Stsc242828g00005 642 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Stsc242828g00005 642 Pfam Protein kinase domain 371 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242828g00005 642 ProSiteProfiles Protein kinase domain profile. 316 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242828g00005 Stsc-Chr242828 9084 11248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242828g00005 5 633 Receptor kinase-like Gene Family AT2G23770 44.654 1.36e-172 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc242828g00005 Pkinase 4.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242828g00005 - - gmx:100815842 837.41