Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242828g00004 ATGTTGTTCTCCATCACCAGCATCCCAACTCAGTCACAACAGATTAATGGAACAGACTTTTCATGCCCAGTGGATTCACCTTCTTCCTGTGACACATATGTGACATACATTGCTCAATCTCCAAATTTATTGAGCCTTTCTAACATATCTGACATATTTGACACCAGCCCTTTATCCATTGCAAGAGCAAGTAACATCAAGAATGAGGATGACAAGCTGGTTCCAGGCCAAGTCTTATTGATACCTGTCACTTGTGGTTGCACTGGAAACCAATCCTTCGCCAATATCACCTACGTGATGAAGCAAGGTGATATGTACGACAGTGTCTCAATAACTTCATTTGAGAATCTCACAAATTGGCGTGTAGTGAATCATTCAAACCCGAATTTGAATCCAGTTCTGTTGCCAATAGGAGCGAAAGTAGTGTTCCCTTTATTCTGCAGGTGCCCTTCAAAGAAGCAGTTACAGAAAGGGATAGAATATATGATCACCTACGTGTGGCAGCACAATGACAGTGTTTCATCTGTGGCAGCCAAGTTTGGTGTATCACCGGTGGACATATCAACTGAAAACAACTACGGTGGAAACTTCACAGCTGCAACCTATCTTCCAGTTTTGATTCCTGTGACAAAGCTGCCAGTTCTTACTCAACCTGATTCTTCAAATGGAAGAAAGAGCAGCATTGGGATCCCTGTTATAATTGGTATTAGCCTGGGATTCATCCTTGTCATTGCTGTTATAGTAATATCATTGGTTTATGCTTATCATTATCAGAGAAAAAGGACTTTAAATAGGAGAGATTCATCTGCCGGGACAGCAGATAAGCTACTCTCTGGGGTTTCAGGCTATGTGAGTAAGCCAACCGTGTATGAAGCTGATGCGATTATCAAAGCCACCACGAACCTCAGCGAACACTGCAAGATTGGAAACACAGTTTACAAGGCTAAAATAGAAGGCCAGGTCTTGGCAGTGAAAAAGGTGAATGAAGTTGTTTCTGAGGAGCTGAATGTTCTGCAGAAGGTGAATCATGGAAACCTGGTGAAACTGATGGGTGTATCTTCAGGCAGTGATGGAAACCATTTCCTGGTTTATGAGTATGCGGATAACGGGTCCCTTGAGGAGTGGCTCTTCTCCAAGTTGTCTTCGAAGGATTCGCTTACATGGTATCAGAGGATTAACATAGCATTGGATGTTGCCATAGGTCTGCAATACTTGCATGAGCACACTTATCCAAGAATAATCCATAGGGACATCACAACAAGTAACATCCTTCTTGACTCAAACTTCAAGGCCAAGATAGGCAACTTCTCCATGGCTAGAACTAGTACAAATCCCATGACTTCCAAGATCGATGTCTTCGCTTTCGGGGTTGTTCTGATTGAGTTGCTTACAGGCAAGAAAGCCATGACAACAAAGGCAGATGGCAAGGTGGTAATGCAGTGGAAGGATATTAGGAGGATATTTGAAGTTGAAGATGAAAAGGAAAAGGAGGAGTGCCTGAGAAGATGGATGGATCCTAAGCTAGAGAGCCTTTACCCTGTGGATTATGCTCTCAGCTTGGTCAAATTGGCCATGAATTGCACAGCCGATGTATCGTTGTCTAGACCAACCATGGCAGAAGTTGTTCTTGGCCTCTCCCTTCTCACTCAACCATCTCAACCTGCACTAGAGAGATCATTAACTTCTTCTGCGTTGGAGGCAGAGGTTACTCATGTGGCCACTCCCATAGCAGCACGTTAA 1740 0.4351 MLFSITSIPTQSQQINGTDFSCPVDSPSSCDTYVTYIAQSPNLLSLSNISDIFDTSPLSIARASNIKNEDDKLVPGQVLLIPVTCGCTGNQSFANITYVMKQGDMYDSVSITSFENLTNWRVVNHSNPNLNPVLLPIGAKVVFPLFCRCPSKKQLQKGIEYMITYVWQHNDSVSSVAAKFGVSPVDISTENNYGGNFTAATYLPVLIPVTKLPVLTQPDSSNGRKSSIGIPVIIGISLGFILVIAVIVISLVYAYHYQRKRTLNRRDSSAGTADKLLSGVSGYVSKPTVYEADAIIKATTNLSEHCKIGNTVYKAKIEGQVLAVKKVNEVVSEELNVLQKVNHGNLVKLMGVSSGSDGNHFLVYEYADNGSLEEWLFSKLSSKDSLTWYQRINIALDVAIGLQYLHEHTYPRIIHRDITTSNILLDSNFKAKIGNFSMARTSTNPMTSKIDVFAFGVVLIELLTGKKAMTTKADGKVVMQWKDIRRIFEVEDEKEKEECLRRWMDPKLESLYPVDYALSLVKLAMNCTADVSLSRPTMAEVVLGLSLLTQPSQPALERSLTSSALEAEVTHVATPIAAR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242828g00004 579 SUPERFAMILY Protein kinase-like (PK-like) 285 543 IPR011009 -
Stsc242828g00004 579 ProSitePatterns Tyrosine protein kinases specific active-site signature. 413 425 IPR008266 GO:0004672|GO:0006468
Stsc242828g00004 579 Pfam LysM domain 45 82 IPR018392 -
Stsc242828g00004 579 Pfam Protein tyrosine and serine/threonine kinase 328 442 IPR001245 GO:0004672|GO:0006468
Stsc242828g00004 579 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 553 - -
Stsc242828g00004 579 ProSiteProfiles LysM domain profile. 34 81 IPR018392 -
Stsc242828g00004 579 ProSiteProfiles Protein kinase domain profile. 270 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242828g00004 579 Gene3D Phosphorylase Kinase; domain 1 279 366 - -
Stsc242828g00004 579 FunFam Os07g0541700 protein 367 454 - -
Stsc242828g00004 579 Gene3D LysM domain 45 94 IPR036779 -
Stsc242828g00004 579 Gene3D Transferase(Phosphotransferase) domain 1 367 443 - -
Stsc242828g00004 579 Gene3D Transferase(Phosphotransferase) domain 1 444 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242828g00004 Stsc-Chr242828 6975 8744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242828g00004 64 548 Receptor kinase-like Gene Family AT3G21630 31.776 6.35e-74 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc242828g00004 PK_Tyr_Ser-Thr 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242828g00004 - - gmx:100301877 781.556