Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242828g00002 ATGAGCAACACGATGAGGATGCCGCCGTCGAAGCACCTGCAGCTTCCTTTCCGATCTATCAATCTCTCTGTTTCTCCTACGCAGTCTACCACCGGCGACGGCGATGGTTCCAAAACCGAGGACATATTTGCTGCCGGAATTGATACTTCAGCATCAACAATAGAGTGGGCTCTGTCTGAAATGGTTAGGAATCCAAGAGTGATGGCTAAGGCACAAGCTGAGATTAGAGAAGCTTTTAGAGGAAAGCAAAGAATCCATGAAAGTGATTTGGATCAACTAAGTTACTTGAAGTTGGTGATCAAAGAAACACTAAGGTTACATGTACCTCTGCCTTTGATCCCTAGAGAATGCACAGAGAAATGCATGATTGGCGGTTATGAAATAGGTGTGGGGACAAGAGTCATGGTGAACGCTTGGGCCATTGCAAGAGATCCAGAGTATTGGCATGATGCTGAGAGGTTTATGCCAGAGAGGTTTGATGGCAATTGTCCCATTGATTTCAGAGGGAATAGCTTTGAGTATTTACCATTTGGTGGAGGAAGAAGAATATGCCCTGGCATAACATTTAGTTTAGCCAGCATTATGTTCCCTTTGGCTCTGTTACTCTATCACTTCAACTGGGAGCTCCCTAACGCCATGAAACCTGAGGATTTGGACATGACTGAACACTTTGGATTAGCAATTGAAAGGAAAAATGACTTGTGCTTGATCCCCACTCTTGTTTTGTAA 729 0.4431 MSNTMRMPPSKHLQLPFRSINLSVSPTQSTTGDGDGSKTEDIFAAGIDTSASTIEWALSEMVRNPRVMAKAQAEIREAFRGKQRIHESDLDQLSYLKLVIKETLRLHVPLPLIPRECTEKCMIGGYEIGVGTRVMVNAWAIARDPEYWHDAERFMPERFDGNCPIDFRGNSFEYLPFGGGRRICPGITFSLASIMFPLALLLYHFNWELPNAMKPEDLDMTEHFGLAIERKNDLCLIPTLVL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242828g00002 242 PANTHER OS08G0105600 PROTEIN 41 239 - -
Stsc242828g00002 242 PRINTS P450 superfamily signature 175 184 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS P450 superfamily signature 98 109 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS P450 superfamily signature 184 195 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS P450 superfamily signature 45 62 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 FunFam Predicted protein 43 236 - -
Stsc242828g00002 242 Gene3D Cytochrome P450 34 233 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 SUPERFAMILY Cytochrome P450 41 238 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 97 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 184 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 54 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 174 184 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 34 51 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 PRINTS E-class P450 group I signature 137 161 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242828g00002 242 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 177 186 IPR017972 GO:0005506|GO:0016705
Stsc242828g00002 242 Pfam Cytochrome P450 40 227 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242828g00002 Stsc-Chr242828 1666 3039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242828g00002 41 242 Cytochrome P450 AT3G26300 53.695 2.45e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242828g00002 - K15472 gmx:100777769 305.834