Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242822g00006 ATGTCCTCCTCCATTAGTACCTTGTTCTCCTTGTTCCTCCGCCGCCATTTCTTCTCCACCAAGCTCCTTACCCTCTCCAAGATCCCCACACGCCACAGAGCCTTCGCTCTCCGTGAAGCCCAGAACGCCCTCACTGACTACCTCCATTCCACCAGGTGTTTGCCTTTTACCTATGCAGAGCACATTGGCAACAAAGCCCTTTGTTCCATCACGAGTCTCATTGCAAAGGTAGATTTTTCACCCCCTACTTTCTCTAAAAGCTTTCAGAAGTTCCTTAGGTACCACCCTATTAACGAATTTGAGGTCTTTTTCGAGAGCATAGGGATAGAGTACAGTATGGTGTCTGAGTTGTTGCCTCGTGACAAGGTGTTCTTTTCCGAAGATGAGACCCTCTTTGATGCTGCTTGCACTCTCTGTGATTTTGGGTTTCCGTGGGAGAAGTTGGGGTTGTTGTATGTGGCAGAAACTTCAATATTTGGCATGAATGCTGAACAGTTGAATAGAAGGCTTTGTGGATTTAAAGGGTATGGTTTTGGTACTATTGAGGTTATTGGTATATGTTTGGCTTTCCCTTTTGTTTTGCTTGAGGAAGGCCAAGTGAGGGTTGGAAGAATCGATGGACTCTTAAGCGATCTGAAGTTGCTATTTTTGGATTTTGGGTTGGGAAGGGTTGTTAAGGGAGATGTGGATTCTTGGCATGAGATGTGTAGAAAATTAAGGGTGTTTTATGATTTAGATAGTCCAAAAGGGGAGTTAGGCGAACTAATCGGAAGGAATAAGAGTATATTTATTGAACATAGAGAAGAAGAGTTAGTTAATAAATTGGATTATTTCTGTAGATTTGGTGTGAAGAAGGAGGAAGTTGCTAAGCTGATTTTACAGTGCCCCGAATTGTTGAAACTGGATCTGGAGAAGCCGATATTCAATGTAATGAAGCTGTTGACACACTTTGGCCTCAGCTCTGAAGATCTAGAGGATGTAAGTCAGGGATATGGTCATGTTATGGGAACAAATAAAATGACTAATCTTCCTAATGTAACGAAGGCTTTGAGTTTACAAGAGTGGTTCTTCAAGAAAATCAAGGACGGAAATCATATGTTGTTAGCAGATTATATCGCAGGATATCCTAAAGAAGAACAAGATCTGGATTATCAAGAAGGGTTAAGGATGATCAGAAGTTTAAAAACACGGGTTCATAATATCAGTAAATTAAATTTCTTGCTTGGTTTGGGCTTTGGAGAAAATACTTTGACCATAAACCTTTTGAATCATCTTCATGGCACCAGTACTGAGCTGCACGAAAGATTTGATTGCCTTCTACGTTCAAAGATTGAGTTCTCCAAGCTCTGTATGATGGTAAGAACAACCCCAAGGATCCTTAACCAAAATTCTGAAGCCATTGAACGAAAGGTGAATTTCTTCCACCAGGAAATGGGAACTCCTTTAAACCATGTGGAAACTTTTCCAGCAATATTGTATTATCACTTAGAGGAACGGATTATACCTCGGTACAGGTTCCACAAGTGGCTTTCAGGAAAGGGACTGAGTTGTAAGAAATATTCCATTCGAAGTATGATTGCAAACAACGAAAAGAAATTTGTAGCTCGTGTCTTCAAAATTCATCCGGCTGCTCCGAAACATTGGTTTGAGCAATTCCGGCACAGTAACTTGTCAGTGTAA 1680 0.4113 MSSSISTLFSLFLRRHFFSTKLLTLSKIPTRHRAFALREAQNALTDYLHSTRCLPFTYAEHIGNKALCSITSLIAKVDFSPPTFSKSFQKFLRYHPINEFEVFFESIGIEYSMVSELLPRDKVFFSEDETLFDAACTLCDFGFPWEKLGLLYVAETSIFGMNAEQLNRRLCGFKGYGFGTIEVIGICLAFPFVLLEEGQVRVGRIDGLLSDLKLLFLDFGLGRVVKGDVDSWHEMCRKLRVFYDLDSPKGELGELIGRNKSIFIEHREEELVNKLDYFCRFGVKKEEVAKLILQCPELLKLDLEKPIFNVMKLLTHFGLSSEDLEDVSQGYGHVMGTNKMTNLPNVTKALSLQEWFFKKIKDGNHMLLADYIAGYPKEEQDLDYQEGLRMIRSLKTRVHNISKLNFLLGLGFGENTLTINLLNHLHGTSTELHERFDCLLRSKIEFSKLCMMVRTTPRILNQNSEAIERKVNFFHQEMGTPLNHVETFPAILYYHLEERIIPRYRFHKWLSGKGLSCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWFEQFRHSNLSV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242822g00006 559 Gene3D Transcription termination factor 3, mitochondrial 383 554 IPR038538 -
Stsc242822g00006 559 Gene3D Transcription termination factor 3, mitochondrial 226 361 IPR038538 -
Stsc242822g00006 559 PANTHER CGI-12 PROTEIN-RELATED 165 540 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 Pfam mTERF 431 533 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 Pfam mTERF 238 346 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 SMART mt_12 450 481 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 SMART mt_12 253 284 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 SMART mt_12 482 516 IPR003690 GO:0003690|GO:0006355
Stsc242822g00006 559 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242822g00006 Stsc-Chr242822 12794 15184 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc242822g00006 mTERF 7.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242822g00006 - - lja:Lj1g3v2862750.1 630.557