Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242822g00005 ATGGTGTCTGAGTTGTTGCCTCGTGACAAGGTGTTCTTTTCCGAAGATGAGACCCTCTTTGATGCTGCTTGCACTCTCTGTGATTTTGGGTTTCCGTGGGAGAAGTTGGGGTTGTTGTATGTGGCAGAAACTTCAATATTTGGCATGAATGCTGAACAGTTGAATAGAAGGCTTTGTGGATTTAAAGGGTATGGTTTTGGTACTATTGAGGTTATTGGTATATGTTTGGCTTTCCCTTTTGTTTTGCTTGAGGAAGGCCAAGTGAGGGTTGGAAGAATCGATGGACTCTTAAGCGATCTGAAGTTGCTATTTTTGGATTTTGGGTTGGGAAGGGTTGTTAAGGGAGATGTGGATTCTTGGCATGAGATGTGTAGAAAATTAAGGGTGTTTTATGATTTAGATAGTCCAAAAGGGGAGTTAGGCGAACTAATCGGAAGGAATAAGAGTATATTTATTGAACATAGAGAAGAAGAGTTAGTTAATAAATTGGATTATTTCTGTAGATTTGGTGTGAAGAAGGAGGAAGTTGCTAAGCTGATTTTACAGTGCCCCGAATTGTTGAAACTGGATCTGGAGAAGCCGATATTCAATGTAATGAAGCTGTTGACACACTTTGGCCTCAGCTCTGAAGATCTAGAGGATGTAAGTCAGGGATATGGTCATGTTATGGGAACAAATAAAATGACTAATCTTCCTAATGTAACGAAGGCTTTGAGTTTACAAGAGTGGTTCTTCAAGAAAATCAAGGACGGAAATCATATGTTGTTAGCAGATTATATCGCAGGATATCCTAAAGAAGAACAAGATCTGGATTATCAAGAAGGGTTAAGGATGATCAGAAGTTTAAAAACACGGGTTCATAATATCAGTAAATTAAATTTCTTGCTTGGTTTGGGCTTTGGAGAAAATACTTTGACCATAAACCTTTTGAATCATCTTCATGGCACCAGTACTGAGCTGCACGAAAGATTTGATTGCCTTCTACGTTCAAAGATTGAGTTCTCCAAGCTCTGTATGATGGTAAGAACAACCCCAAGGATCCTTAACCAAAATTCTGAAGCCATTGAACGAAAGGTGAATTTCTTCCACCAGGAAATGGGAACTCCTTTAAACCATGTGGAAACTTTTCCAGCAATATTGTATTATCACTTAGAGGAACGGATTATACCTCGGTACAGGTTCCACAAGTGGCTTTCAGGAAAGGGACTGAGTTGTAAGAAATATTCCATTCGAAGTATGATTGCAAACAACGAAAAGAAATTTGTAGCTCGTGTCTTCAAAATTCATCCGGCTGCTCCGAAACATTGGTTTGAGCAATTCCGGCACAGTAACTTGTCAGTGTAA 1344 0.3929 MVSELLPRDKVFFSEDETLFDAACTLCDFGFPWEKLGLLYVAETSIFGMNAEQLNRRLCGFKGYGFGTIEVIGICLAFPFVLLEEGQVRVGRIDGLLSDLKLLFLDFGLGRVVKGDVDSWHEMCRKLRVFYDLDSPKGELGELIGRNKSIFIEHREEELVNKLDYFCRFGVKKEEVAKLILQCPELLKLDLEKPIFNVMKLLTHFGLSSEDLEDVSQGYGHVMGTNKMTNLPNVTKALSLQEWFFKKIKDGNHMLLADYIAGYPKEEQDLDYQEGLRMIRSLKTRVHNISKLNFLLGLGFGENTLTINLLNHLHGTSTELHERFDCLLRSKIEFSKLCMMVRTTPRILNQNSEAIERKVNFFHQEMGTPLNHVETFPAILYYHLEERIIPRYRFHKWLSGKGLSCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWFEQFRHSNLSV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242822g00005 447 PANTHER CGI-12 PROTEIN-RELATED 54 428 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 Pfam mTERF 319 421 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 Pfam mTERF 126 234 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 Gene3D Transcription termination factor 3, mitochondrial 112 250 IPR038538 -
Stsc242822g00005 447 Gene3D Transcription termination factor 3, mitochondrial 269 442 IPR038538 -
Stsc242822g00005 447 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 SMART mt_12 370 404 IPR003690 GO:0003690|GO:0006355
Stsc242822g00005 447 SMART mt_12 177 208 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242822g00005 Stsc-Chr242822 12794 15184 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc242822g00005 mTERF 7.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242822g00005 - - qsa:O6P43_026967 496.123