Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242812g00001 ATGGAATACAATCTAGGTCAAGGCAATGTTACTCCACCTGGGTCCATTGATAAGTCTAGGGTTTTGAATGTTAAGCCACTTAGAACTCTTGTTCCTGTGTTTCCTTCCCCTTCAAATCCCTCTTCCTCTTCAAATCCACAAGGTGGTGCACCCTTTGTTTGTGTTTCTCCTTCTGGTCCTTTCCCTTCTGGCGTGGCACCCTTCTACCCGTTCTTCATCTCCCCGGAGTCCCAGAGGCTATCTGAACAGAATGCACAAACCGCACAAACACCGACTCCTCAACGTGTGGGCCCAATATCAGCTGCAGTTCCAATTAATTCATTTAGGACGCCAAATGGAGATGTTGGTTCATCACGAAAAAATAGCAGAGCTCGTGGACAGTTAACAGATGAAGATGCCTATGCTGAGGTGCAAGATGTTGATGCTGAAGATGAAACGGGGGAAGGGAGACGCTCTAAACAGAAGAAACCAAGGGGACGGCGTCCTAGTGGCGGCAGTGTAGTGGTTGATCTGGATCAAGCGGCTAATGATATTCTCAGTTCAATTAATCCTGTTGTTTTTGATGTTCTAAAACAACCTGATGGTAGTAGGGATGCAGTTACATATACACTTATGATATATGAAATTATGCGAAGAAAGCTTGGACAAGTTGAAGAGATATCAAGGGATATTGCTGGAGCAAAGCGGCCTGATCTGAAGGCTGGTAATATTATGATGACCAAGGGGATTAGGGCAAATAGCAAGAAACGTATTGGAGTTGTGCCCGGTGTTGAAATTGGGGATATTTTCTTTTTCAGATTCGAATTGTGCTTAGTTGGATTACACTCTCCATCTATGGCTGGAATTGATTACATTGGTTCCAAAACCAGTCAAGAGGAAGAAACACTAGCTGTCAGTATTGTCTCTTCTGGAGGATATGAGGATAATGCAGAGGACGGGGATGTGTTGATTTACAGTGGCCAAGGAGGGGTTAATCGGGATAAGGGAGCAAGCGACCAAAAGCTTGAAAGGGGTAATCTTGCACTGGAAAAGAGCTTGCATAAAGGTAATGAAGTGAGAGTAATTAAGGGTTTGAGGGATGAAGCACATCCAACTGGTAAGGTATATGTCTATGATGGCCTTTACAAGATCCAGGATTCGTGGGTAGAGAAAGCAAAATCTGGGTTCAATGTTTTCAAATATAAATTAGCTAGGGTGCCCGGGCAGCCTGCTGCATATATGATATGGAAATCCATTCAACAGTGGACTGATAAAACTGTTACAAGAACTGGAGTTATATTGCCTGATCTTACTTCCGGGGCAGAAAATCTACCTGTTTGTCTTGTGAATGATGTTGATAATGAGAAAGGCCCTGCGTATTTTACTTACTCCCCTTGTGTCAAGAATTTGAAGCCAACTGCTCCTTTGGAATCTTCTGCTGGATGTTCTTGTACTGGTGGATGCCAAGCTACCAACCGTAACTGTCCTTGTATTCAAAAGAATGGAGGTTATCTCCCGTATTCTGCAAATGGGATGCTTGCTGATCTGAAGTCTGTGATATATGAGTGTGGTCCTTCCTGTCAGTGCCCTCCAAATTGCCGAAATCGGANNNNNNNNNNTTCGCAAGCTGGCCTGAAATTTCGTTTGGAGGTGTTCAAGACGAAGGATAAAGGTTGGGGTCTAAGGTCTTGGGATCCTATTCGTGCAGGAACTTTCATATGCGAGTATGCTGGGGAAGTTATAGATAATGCTAGAGTGGATGAATTTAGCGGTGAAAATGATGATGATTACATTTTTGACTCTACTCGCATTTATCCGCAACTGGAAGTTTTCCCTGCTGATACGGAAGCTCCAAAGATTCCTTCCCCTCTTTATATATCAGCAAAAAATGAAGGGAATGTGGCTCGGTTTATGAATCACAGCTGCTCTCCAAATGTATTGTGGCGTCCAGTTCTACGGGAAAATAAGAATGAATCTGATCTGCACATTGCTTTCTATTCAATTAGACATATCCCTCCTATGATGGAATTAACTTATGATTATGGAACAGTTCTTCCTCTCAAAGGTGGCCAGAAGAAAAAGAAATGCTTTTGTGGGTCTGCGAAATGCAGGGGTTACTTTTGTTAG 2106 0.4302 MEYNLGQGNVTPPGSIDKSRVLNVKPLRTLVPVFPSPSNPSSSSNPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNAQTAQTPTPQRVGPISAAVPINSFRTPNGDVGSSRKNSRARGQLTDEDAYAEVQDVDAEDETGEGRRSKQKKPRGRRPSGGSVVVDLDQAANDILSSINPVVFDVLKQPDGSRDAVTYTLMIYEIMRRKLGQVEEISRDIAGAKRPDLKAGNIMMTKGIRANSKKRIGVVPGVEIGDIFFFRFELCLVGLHSPSMAGIDYIGSKTSQEEETLAVSIVSSGGYEDNAEDGDVLIYSGQGGVNRDKGASDQKLERGNLALEKSLHKGNEVRVIKGLRDEAHPTGKVYVYDGLYKIQDSWVEKAKSGFNVFKYKLARVPGQPAAYMIWKSIQQWTDKTVTRTGVILPDLTSGAENLPVCLVNDVDNEKGPAYFTYSPCVKNLKPTAPLESSAGCSCTGGCQATNRNCPCIQKNGGYLPYSANGMLADLKSVIYECGPSCQCPPNCRNRXXXXSQAGLKFRLEVFKTKDKGWGLRSWDPIRAGTFICEYAGEVIDNARVDEFSGENDDDYIFDSTRIYPQLEVFPADTEAPKIPSPLYISAKNEGNVARFMNHSCSPNVLWRPVLRENKNESDLHIAFYSIRHIPPMMELTYDYGTVLPLKGGQKKKKCFCGSAKCRGYFC 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242812g00001 701 ProSiteProfiles Pre-SET domain profile. 473 534 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242812g00001 701 SMART preset_2 427 521 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 77 167 - -
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 34 51 - -
Stsc242812g00001 701 Pfam Pre-SET motif 431 529 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 105 123 - -
Stsc242812g00001 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 120 694 - -
Stsc242812g00001 701 SMART set_7 540 681 IPR001214 GO:0005515
Stsc242812g00001 701 Pfam SET domain 551 675 IPR001214 GO:0005515
Stsc242812g00001 701 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 235 417 - -
Stsc242812g00001 701 Gene3D - 234 419 IPR036987 -
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 1 57 - -
Stsc242812g00001 701 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 100 700 IPR025794 GO:0016571
Stsc242812g00001 701 ProSiteProfiles Post-SET domain profile. 685 701 IPR003616 -
Stsc242812g00001 701 Gene3D SET domain 420 700 IPR046341 -
Stsc242812g00001 701 SUPERFAMILY SET domain 413 681 IPR046341 -
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 77 96 - -
Stsc242812g00001 701 ProSiteProfiles SET domain profile. 540 675 IPR001214 GO:0005515
Stsc242812g00001 701 ProSiteProfiles YDG domain profile. 252 398 IPR003105 -
Stsc242812g00001 701 Pfam SAD/SRA domain 251 402 IPR003105 -
Stsc242812g00001 701 SMART G9a_1 247 402 IPR003105 -
Stsc242812g00001 701 MobiDBLite consensus disorder prediction 1 16 - -
Stsc242812g00001 701 SUPERFAMILY PUA domain-like 234 417 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242812g00001 Stsc-Chr242812 5436 9970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242812g00001 6 700 Su(var)3-9 homologs AT1G73100 48.107 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc242812g00001 SAD_SRA 6.7e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242812g00001 K24405 - gmx:100805932 1101.27