Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242807g00001 ATGGCGGTAGCTGTCCCCTCCGGGTTCATGGAGAAACTGATAGCAGATCTTAATTCACCTGCACTTGAAGAATTCCGTTTGAAGTTCGGTGTTTCCGGCGAAATGAAACGTTTGAAAGATACTCTTGCATCGATCAATTCTATGATGCTGGATGCCGAGAAAAGGCAAGAAAAGGAGCCAGCTCTGAGAGATTGGCTGAGGAAGTTGAAAGATGTCCTCTATGATGCTGAGGACCTCCTTGATGAATTTCAGTTCAAAATGTTAAGCAGTCGTGTGGATAGAGACTCCAAGGTACGGCGTTTCTTCTCAACTTCTAGTCGTTTTCTTTTTCGCTGGAAGATGCTTGAAAAAATTGTATCAATCGAGGAAAGACTAGACCTCGTTGCAGCTGGTATGCCTAAATTTGCCCTAGAAGCAATTGATGTTGATAAGCGAGTTCCGCATAGGAGCAGGGAAACGACTTCCTCGTCATCTTTTGCTTATGAAGATGTAATAGGACGGGATCTTGATAAAGAACTTATCATAGATCTCCTGATGCAGCAGAATCCTGAAGATGATGATGGACGTTTCTCTGTTATTCCCATTGTTGGCATGGGCGGACTAGGAAAAACAACACTTGCTCGCACTGTCTTCCATGATGAGAGGGTAACCGAGGCTTTCCCATTGAAATCGTGGGTGTGTGTTTCTGAAGATTTTAATATTAAGCAATTGATGGTTAAGATCATCAATTCTGCTAGCAATTTTGCTCATGCACACCGACTGAATTTAGAAGAATTAGAGATTGAGCAATTGCGATATCTTCTAAGTAATACACTTTCTAGTCAAAAGTTCCTACTTGTTTTAGATGACGTATGGAATGAAGATCGTGTTAAATGGATTGAGCTGAGAGATTTAATTCAAGCGAGCAGTAAAGGAGGTAAAATCCTATTGACAACACGCGGTGAAAGAGTTGCTTCTATGATGGGTACTGCACCCCCTTACTATCTACAACCTCTTTCACATGAGGAATCATGGTCTCTCTTTGTTGAATGTGCCTTCAGAAACAGACAACAGGAAAAGCACCCAGAATTCGAAGACATTGGAAGACAAATTGTGGAAAAATGTAAAGGGCTTCCGTTGGCTGTGAGAACCCTGGGGAGTTTACTATTTTCTAAGTGTACGCGGCATGAGTGGATGCATGTGTTGGAGTCACTGAGAAATAATGATATTTGGAATTCGAAAGGCATTCTTCCTGTACTTAAACTAAGCTATGATCAAATGCCAACTTATTTGAAGCAATGTTTTGCCATGTTCTCTCTTTACCCACATGATTATGTTTTTCTTAGTTCTGATGTTGCTTCTTTATGGGGAGCTCTAGGTTTGCTTCTACCGCCAGCCGTAGGTGAAACATTTTTAGATGTTTCAAATCAGTATTTGAGTGAATTGAGTTCCAGATCTCTCATTCAGTATGTTGAAGACTATGGCACTTTCTTTTGTTTTCAAATTCACGATTTAGTGCATGATCTCGCAGTATTTGTTGCAGGAGATGAGTGTCTATTAGTCGGGTCACAAGATCAAGTTATATCAGGAAATATTCGACATCTATCTTTTATTGAAGATGATTTGAAGTACTTCACACAACAAAAATTTGGTATGAGAACCATACTATTTCCTGTTCATGGAGTGGGAGCCAAGAATGAAGTTTGGTTGAATGAATGGATATCAAGCTACAAATCCTTGCGATTTTTGGATCTGAGTGATTCTACTTATGTGACTTTGCCCCAGTCCATTGCTAAGTTGAAACATTTAAGATTTCTCTCTCTCAGGAACAACACCAAAATAAAGAGGCTGCCTGATTCAGTTTGCGAACTACTAAATTTGCAATCTTTGCTTCTTGATGGGTGCACACGGCTTGAGATATTGCCAAAAGAATTGAGGAAGTTGATCAATCTTCGACAGCTAGGGATAACCACAAAGCAGCCTGTTTTGCCTGAGAGCGACATTGAAAACCTGATGTCTCTTGAATATTTATGTATTAAAAAATGTGAAAAGCTGGAATCCTTGTTTGTAGAGAGAAAATTGCCTAGTCTTCAAACTTTGGAGGTTGAAATTTGTGATAGGTTGAGGTATTTGCCACTTGATGTAAACCATTTTCCAAAATTGGAGACTTTGGTAATCAACAAGTGTGCTGATTTGCAATTCTCTCATGAATGGCTATCTACTCTGAGTTTACTGAAATCTCTTCAAATAATAGGTTGTCCTAATTTCAAACCTCTTCCCAGCGACCTCAATCTCCCAGCGCTTAAATCATTCAAAAACAGTGATGGTCCTGGATTACTCTCAACTGACCAGTTCAAGATGTAG 2343 0.3986 MAVAVPSGFMEKLIADLNSPALEEFRLKFGVSGEMKRLKDTLASINSMMLDAEKRQEKEPALRDWLRKLKDVLYDAEDLLDEFQFKMLSSRVDRDSKVRRFFSTSSRFLFRWKMLEKIVSIEERLDLVAAGMPKFALEAIDVDKRVPHRSRETTSSSSFAYEDVIGRDLDKELIIDLLMQQNPEDDDGRFSVIPIVGMGGLGKTTLARTVFHDERVTEAFPLKSWVCVSEDFNIKQLMVKIINSASNFAHAHRLNLEELEIEQLRYLLSNTLSSQKFLLVLDDVWNEDRVKWIELRDLIQASSKGGKILLTTRGERVASMMGTAPPYYLQPLSHEESWSLFVECAFRNRQQEKHPEFEDIGRQIVEKCKGLPLAVRTLGSLLFSKCTRHEWMHVLESLRNNDIWNSKGILPVLKLSYDQMPTYLKQCFAMFSLYPHDYVFLSSDVASLWGALGLLLPPAVGETFLDVSNQYLSELSSRSLIQYVEDYGTFFCFQIHDLVHDLAVFVAGDECLLVGSQDQVISGNIRHLSFIEDDLKYFTQQKFGMRTILFPVHGVGAKNEVWLNEWISSYKSLRFLDLSDSTYVTLPQSIAKLKHLRFLSLRNNTKIKRLPDSVCELLNLQSLLLDGCTRLEILPKELRKLINLRQLGITTKQPVLPESDIENLMSLEYLCIKKCEKLESLFVERKLPSLQTLEVEICDRLRYLPLDVNHFPKLETLVINKCADLQFSHEWLSTLSLLKSLQIIGCPNFKPLPSDLNLPALKSFKNSDGPGLLSTDQFKM 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242807g00001 780 Gene3D - 417 504 IPR036388 -
Stsc242807g00001 780 Gene3D - 149 324 IPR027417 -
Stsc242807g00001 780 Gene3D - 10 119 - -
Stsc242807g00001 780 PANTHER DISEASE RESISTANCE PROTEIN RP 36 764 IPR044974 GO:0006952
Stsc242807g00001 780 FunFam Probable disease resistance protein At1g61300 147 326 - -
Stsc242807g00001 780 Gene3D Ribonuclease Inhibitor 555 767 IPR032675 -
Stsc242807g00001 780 CDD RX-CC_like 23 126 IPR038005 -
Stsc242807g00001 780 Gene3D - 331 416 IPR042197 -
Stsc242807g00001 780 Pfam Rx N-terminal domain 9 97 IPR041118 -
Stsc242807g00001 780 Coils Coil 35 55 - -
Stsc242807g00001 780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 430 IPR027417 -
Stsc242807g00001 780 PRINTS Disease resistance protein signature 271 285 - -
Stsc242807g00001 780 PRINTS Disease resistance protein signature 568 584 - -
Stsc242807g00001 780 PRINTS Disease resistance protein signature 368 382 - -
Stsc242807g00001 780 PRINTS Disease resistance protein signature 192 207 - -
Stsc242807g00001 780 Pfam NB-ARC domain 174 418 IPR002182 GO:0043531
Stsc242807g00001 780 SUPERFAMILY L domain-like 495 763 - -
Stsc242807g00001 780 FunFam Probable disease resistance protein At5g66910 331 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242807g00001 Stsc-Chr242807 9587 12305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242807g00001 171 385 WRKY Transcription Factor Family AT5G45050 24.893 2.53e-06 49.3