Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242801g00001 ATGGCGTCGTCCGAGGGTTTCACTGACAAGAACACGGTGTTCAGAAAACTCAAGGCCAAGTCTGAAAACAAGATGTGTTTCGATTGCAATGCGAAGAATCCAAATTGGGCGTCGGTTACGTATGGGGTCTTCCTATGCATTGATTGCTCCGCTGTTCATCGCAGCCTCGGAGTGCATATCAGCTTCGTGAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAATTATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAACAGCATGGCTGGAATGATGGTGGCAAAATAGAAGCGAAGTATAGATCCAGAGCTGCGGAAATGTATAGACAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCCGAGGAGGGAGTTGCGCCATCATCACCTGTTGCTTCTCAGTCTTCTCAAGGGGCTAATGGACTTAGTGAAGTTCAGACCAGTGGAGTAACAAAAGAAAACACATCCGATAAACCAGAAAAGCCTGAGAGCACTTCTTCACCCCGTGCTTCACATACACATACAGTAGTTTCAAGCGTTGTCAAGAAGCCTATTGGTGCTAAAAAAACTGGGGGACTTGGTGCCCGTAAGCTTACTAAAAAGCCAAGCGAATCCCTCTATGAACAAACACCCGAAGAACCACCTGCTCCGGTTCCATTGGCCACAAACAATAATGTGCTTGCTCCATCTATAGCATCCCGATTTGAGTATGTTGAAAATGTCCAATCATCTGAGGCAAACTCTGGAGGTTCTCAGGTAATTGGTCATGTTGCTCCGCCAAAGTCATCAAGCTTCTTTTCTGACTTCGGAATGGATAGTGGCTTTTCAAAGAAATCTGGACCTAGCTCCTCGAAAGCGCAAATTGAGGAAACAGATGAAGCCAGAAAGAAGTTCTCGAATGCAAAATCCATTTCTTCGTCCCAATTTTTTGGAGATCAGAACAGTGCTGCTGATGTGGATGCTAAGGTTACTTTGTCAAAGTTTTCGGGTTCAAGTGCCATCTCTAGTGCTGATCTTTTTGGCGACTCAAGAGACAACTCCGGAGCTGATGTTTCTGCTAGTGACCTCATCAATCGATTATCTTTCCAGGCGCAACAAGATATCTCCTCGCTTAAAAACATCGCCGGAGAGACTGGGAAGAAGCTCACCTCATTGGCATCCAATTTGATGATGGATCTTCAAGATCGAATTCTTTAA 1215 0.4436 MASSEGFTDKNTVFRKLKAKSENKMCFDCNAKNPNWASVTYGVFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKIMSFGGNNRAQVFFKQHGWNDGGKIEAKYRSRAAEMYRQILSKEVAKSMAEEGVAPSSPVASQSSQGANGLSEVQTSGVTKENTSDKPEKPESTSSPRASHTHTVVSSVVKKPIGAKKTGGLGARKLTKKPSESLYEQTPEEPPAPVPLATNNNVLAPSIASRFEYVENVQSSEANSGGSQVIGHVAPPKSSSFFSDFGMDSGFSKKSGPSSSKAQIEETDEARKKFSNAKSISSSQFFGDQNSAADVDAKVTLSKFSGSSAISSADLFGDSRDNSGADVSASDLINRLSFQAQQDISSLKNIAGETGKKLTSLASNLMMDLQDRIL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242801g00001 404 MobiDBLite consensus disorder prediction 134 159 - -
Stsc242801g00001 404 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Stsc242801g00001 404 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Stsc242801g00001 404 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Stsc242801g00001 404 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Stsc242801g00001 404 Gene3D Arf GTPase activating protein 2 142 IPR038508 -
Stsc242801g00001 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 7 404 - -
Stsc242801g00001 404 CDD ArfGap_ArfGap2_3_like 9 124 - -
Stsc242801g00001 404 MobiDBLite consensus disorder prediction 129 228 - -
Stsc242801g00001 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 2 138 - -
Stsc242801g00001 404 Pfam Putative GTPase activating protein for Arf 12 114 IPR001164 GO:0005096
Stsc242801g00001 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Stsc242801g00001 404 MobiDBLite consensus disorder prediction 281 300 - -
Stsc242801g00001 404 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242801g00001 Stsc-Chr242801 3392 7547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242801g00001 14 92 C2H2 Transcription Factor Family AT4G21160 46.250 2.76e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242801g00001 K12493 K11855 gmx:100785169 629.017