Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242796g00001 ATGGCACAAAGGCTATTCAAGACTAACCCAGAGCAGGATGAAGGCAAAAGACTTGAAATAGCACAAGATCTTGGGATGGATCCGAACCAAGTCAAGTTTTGGTTCCAGCACAGGAGGAATCAGAAAAAGAGTAAAGAAGATAATGAAATGATGGAGAAGGAAACCGACGGTGAATTCAAGGAAAAGCTGAAGGGTTTGATGAAAATGTGCCAAGCTTGTGATGAAGGTAGTCGTCCTCCTTCTTCAAATTCTGCTGCTGCTGCTGCTGGAGATAATTCCTTTGAACAACTTATGAATGATAATCAACCACTTAAATCCGAGAGTGATGATGATGAACTATCATGCCTATTGAGGTACATGGAGAATCATCCCTTGTCAGAACAAATCTCACTGCAAAGTTTCCTAAACCCAACAAGGACTGAAAGGAGAGATTCTGCTCTGAATCTCAATCATAATTTGACTTTGGGAAACAGTTCTGTTTACTCCTCTTCATGGTCAAAGGGTGAAACTTCTTTGACACCAACAGAAAGAGAGAGAATGATGGAAAGTGAAAGAGCACTAATGGTTAAAGTTGCAAAGGCTGCAATGGAGGAACTGGTTGTTCTTGTGAGCACCAATGAGCCACTTTGGGAGTCCCTCAATAACTCTCCAAATAGTGCTCCAAGACTTGTCCTTATCCCTCAAATCTATGACATATTGTCTCATAGGGTTCCTAGTAGTGTTTATGATAATAATCAACATCATTTCAATAACTCCACCACAATGCGTGTAGAATCTTCTAGAGATTCACGAATTGTGAAACTTCAAGCTTCGGAGCTGGTTGACGCCATTCTAAATACTACATGTTGGACCAATATGTTCCCAACGATGATTCCAAAAGCCCTAACCCTGCAAGTGCTTAAGAAAGGTACCGAAGGAAATCAACATGGAGCTTTGCAGCTGATATATGAAGAGATGCACCTTCTGTCACCTCTATTGCCACCTCGTGAATTCTTTTTGCTGCGATTTTGCCAACAACTTGAATCAAATGTATGGTTCATAGCTGACGTGTCATATAATCACGCTAAAGAGGAGAAACCAGCTGACCAGTTTCGTGCTTGGAAGCGTCCCTCCGGATGCAAGATTGAAGCGTTGCCAGATGGCACCTCTCGAGTTACATGGGTTGAGAATGTGTTAGTCGATGACCTATCTCAAACGCACCCTCTCTTTAGAGATCTGCTTGTTAAGGGTGGAAGCACTGCATATGGAGCTGAAAAATGGCTCATGGAAATCCAAAGGACATCTGAAAGATTTGCTAGTTTCACTTCCAATGACTACAGTAACTACGAAATTGAAGGAGTTATGATTACATTTCCTGGAGAAAGAAGGAATCTAATGAGAGTGTGTCAGAGAATGGTAAGAGAGTTTTGTGGGATTCTAAAGCACTCAAGCAAGAAAGAGTACAACCGAAATACAAGTGAGCTAGTGAGAGATAATGGAATTAGGTTCTCCATTTGTGACAAAACTGACGAAGAAGAAGAAGCTCATCATAACACAAATAGCAATGATAGCAATGCTGTTCTTGCTTCCTCTATTTGGCTTCCTTTTACTTCTCAGCATGTCTTTAGCTTCTTCTCAGATCCAAAAAATCGTTCTCAGTGGGACTTTATTTGTTCTAGAAATCGGGTGGAAGTAGTTGCACGTTTCTCAACTGGGACTCATCCAGGCAACTATATATCAATTATGCAGCTTGTGAAGCCTGGTGCTAATAAAGTAGCAATGATAATTATTCAAGAAAGCTTCACAAGTTCTTGTGGATCATACATCATGTACAGTCCAATTAGTGAGGAAGACTTCTACACTGCTATCCATGGCGACCGAGAAGCATCAATTTCGGTGCCGCTCCTTCTTTATGGACTAACCATCGCGGATGATGAAGATTACAATGATGATGATGGAGGGGACAATAATAGCGTAATTGGTTCATCACTCTTAACTCTTACTTTACAGGTTCCCATTCAGAAAGGCCAAGCTGCTGCTGGTGGTGGTGCATTTAGTATGGAACCGTCAGAGGCTTCTGCTACAGAAATCATTGCCAAAATTATTGAGAAAATCAAGGTTGCACTTGATTGTCCTGAATCTGAATCTGATGAGGAGGATGATTCTGACGGCAATAATTAA 2160 0.4125 MAQRLFKTNPEQDEGKRLEIAQDLGMDPNQVKFWFQHRRNQKKSKEDNEMMEKETDGEFKEKLKGLMKMCQACDEGSRPPSSNSAAAAAGDNSFEQLMNDNQPLKSESDDDELSCLLRYMENHPLSEQISLQSFLNPTRTERRDSALNLNHNLTLGNSSVYSSSWSKGETSLTPTERERMMESERALMVKVAKAAMEELVVLVSTNEPLWESLNNSPNSAPRLVLIPQIYDILSHRVPSSVYDNNQHHFNNSTTMRVESSRDSRIVKLQASELVDAILNTTCWTNMFPTMIPKALTLQVLKKGTEGNQHGALQLIYEEMHLLSPLLPPREFFLLRFCQQLESNVWFIADVSYNHAKEEKPADQFRAWKRPSGCKIEALPDGTSRVTWVENVLVDDLSQTHPLFRDLLVKGGSTAYGAEKWLMEIQRTSERFASFTSNDYSNYEIEGVMITFPGERRNLMRVCQRMVREFCGILKHSSKKEYNRNTSELVRDNGIRFSICDKTDEEEEAHHNTNSNDSNAVLASSIWLPFTSQHVFSFFSDPKNRSQWDFICSRNRVEVVARFSTGTHPGNYISIMQLVKPGANKVAMIIIQESFTSSCGSYIMYSPISEEDFYTAIHGDREASISVPLLLYGLTIADDEDYNDDDGGDNNSVIGSSLLTLTLQVPIQKGQAAAGGGAFSMEPSEASATEIIAKIIEKIKVALDCPESESDEEDDSDGNN 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242796g00001 719 Gene3D - 240 396 IPR023393 -
Stsc242796g00001 719 SUPERFAMILY Bet v1-like 184 394 - -
Stsc242796g00001 719 Pfam START domain 241 409 IPR002913 GO:0008289
Stsc242796g00001 719 CDD START_ArGLABRA2_like 185 429 - -
Stsc242796g00001 719 MobiDBLite consensus disorder prediction 38 57 - -
Stsc242796g00001 719 SUPERFAMILY Bet v1-like 451 612 - -
Stsc242796g00001 719 CDD homeodomain 3 46 IPR001356 GO:0003677
Stsc242796g00001 719 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Stsc242796g00001 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 702 IPR042160 -
Stsc242796g00001 719 SMART START_1 190 430 IPR002913 GO:0008289
Stsc242796g00001 719 SUPERFAMILY Homeodomain-like 4 52 IPR009057 -
Stsc242796g00001 719 ProSiteProfiles START domain profile. 181 433 IPR002913 GO:0008289
Stsc242796g00001 719 MobiDBLite consensus disorder prediction 40 57 - -
Stsc242796g00001 719 ProSitePatterns 'Homeobox' domain signature. 20 43 IPR017970 GO:0000981|GO:0006355
Stsc242796g00001 719 Gene3D - 2 52 - -
Stsc242796g00001 719 Pfam Homeodomain 4 43 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242796g00001 Stsc-Chr242796 1480 5082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242796g00001 3 709 Homeobox Transcription Factor Family AT1G73360 31.973 2.77e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc242796g00001 START 7.4e-24 CL0209