LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242780g00001	ATGGCTGTCCCTCTGGCCGTTATTATTTTCTTGGCCTTAGCCTCCACCATCACGCAGCCGCGTCCGACCTCGGCCGCCTTCTTCCTCCCCCGAGACAACTACCTCATCGATTGCGGTTCGGACACCGGAACCACGCTCCCGGACGGAAGAACATTCAAATCAGACCCAGAATCCAACACTTACTTGGAAGCCAATGATCAAAACAAGGTGTCAATAGAAAATAATGGCAACAATAATAACCCTAATCTCCCAAACCCATTGTACTCAAGTGCAAGAATCTTCATGCAAGAAGCCAAATACTCCTTCCATTTAATCCAACGAGGTTACCATTGGATTCGCCTTTATTTCTACCCAATCAAGAATAACATCTTTGATCTCCAAAAAGCTACCTTCTCCGTCAACGCCCAAAAATATGTTCTTCTCCATAACTCCAACGTTAACAACAATGACAAGCCAATTTTAAAGGAGTACCTCATCAATGCAAATGAACCTATTTTCACATTATCCTTCACTCCGATGAAGAACTCGGCCGCGTTTATCAACGCCATCGAAATAATCTCCGTCCCAGACAAGGTTCTTTTCGACTCCGGCTCGAACCTTTTCCCGGTCGGAGACTATTCCGGCCTGTTTGGCTACGCTTTCCAGCCGGTCTACAGGATAAACAATGGTGGACCGTCCGTCACGGCGTCAAACGACACTTTAGGCCGGAATTGGGAGAACGACGAGCCTTATATCACGGTGAAGAACGCCGCCATGGATGTAGTTCTACCTCCAAATACAATCAAGTACCCTACGGATAATCCGAACATCTCTCCGCTTATTGCTCCGCCTACGGTGTACGCGTCGGCGACGGAGATGAGCAACGAGACGGCGGTGGATCAACCGAATTTCAACGTCACGTGGAAGTTTGACGTGGATACTTCTTTCAGCTACCTTGTGAGGTTGCATTTCTGCGACATTGTAAGCAAAAGTTTGAACGAGCTTTACTTCAATGTCTACATAAACGAGAAAACCGCCATTCCCACGCTTGATTTGTCAAGCGTCACGCAAGCATTGGCGACTCCTTATTACCGAGACTTCGTGGTCAACGCGAGTTTGATGACTCAAGAAGGAATCAAGATTCAGGTTGGAGCGTCGCTTGCAAGAGGAGGAAGCGGGAACGCCATCATGAACGGAATCGAGATCTTGAAGATGAGTAACTCTTTGGATAGTTTGGACGGCCAATTTGGACAAGATGGAAGCAACGGCGGTTTCTCTTACCGCGGAGCGGTGGCCGGGGTTGGGTTCGCGATGATGTTCGGGGCATTCGTCGGGCTTGGCGCCATGGTTATCAGGTGGCACAGGCGGCCTCAAGATTGGCAGAAACGGAACAGTTTCTCGTCATGGTTGCTTCCTGTGCACGCCGGAGATAGTACCTTCATGAGTAAAAATGGTTCCGGGAAGAGCAATTTCTCCTCCATGGGGATGGGTTTAGGCCGGTTCTTCTCCTTCGCGGAGCTTCAAGAAGCTACCAAGAATTTCGATAAAGCAAACATTATCGGAGTTGGCGGATTCGGCAACGTTTACTCCGGTGTAATAGACGAGGGGACTCAGGTCGCCGTGAAGAGAGGGAATCCGCAATCGGAACAGGGGATTAACGAATTCCAAACTGAGATCCAAATGCTTTCAAAGCTTAGGCATAGGCATTTGGTTTCTTTGATCGGATACTGCGATGAAAACGATGAAATGATTTTGGTTTATGAGTACATGCCTAATGGACATTTTAGGGACCATCTTTACGGCAAGAACATGGTGGGACCACCACTTTCTTGGAAGCAAAGGCTGGAAATCTGCATCGGAGCGGCTCGAGGTCTTCACTACCTTCACACCGGCACGGCGCAGGGTATCATCCACCGCGACGTTAAGACGACTAATATACTGCTTGACGAGAACTTCACGGCTAAGGTTTCTGATTTTGGTTTATCAAAGGATGCTCCTATGGGGCAGGGTCATGTTAGTACGGCGGTTAAGGGTAGCTTTGGGTATTTGGATCCTGAATACTTCAGGAGGCAGCAGCTGACTGAAAAATCTGATGTGTATTCGTTTGGAGTGGTGCTTCTTGAAGCGTTGTGTGCAAGGCCTGCTATTAATCCTCAGTTGCCCCGGGAACAAGTAAACTTGGCTGATTGGGCTATGCAATGGAAGAGAAAGGGGTTGCTTGATAAGATAATTGATCCAAATCTTGTTGGCACCATTAACCCCGAATCGTTGAAGAAGTACGCCGATGCCGCCGAGAAGTGCTTGGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGACGTGCTTTGGAATTTAGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGAAGGAAAGGCAGAGGATGTGCCTCCAGCTGTTCCGGCCCAAGCCCCAGCCCCAGTCCCGGACGCAGCCCCGGCCCCGGTCGTGGCCGCTCCGGCATCTTCCAGTGCCTTGAATGAGGATGTCCCTAATCCGGAAGGAAATAACCGACCGGCCGAAGGCCGAGCAATTGATGACCATTCCGGAACTTTGCAGTTTGCTAAGTTTAGCCTTAATGGCAGATGA	2592	0.4919	MAVPLAVIIFLALASTITQPRPTSAAFFLPRDNYLIDCGSDTGTTLPDGRTFKSDPESNTYLEANDQNKVSIENNGNNNNPNLPNPLYSSARIFMQEAKYSFHLIQRGYHWIRLYFYPIKNNIFDLQKATFSVNAQKYVLLHNSNVNNNDKPILKEYLINANEPIFTLSFTPMKNSAAFINAIEIISVPDKVLFDSGSNLFPVGDYSGLFGYAFQPVYRINNGGPSVTASNDTLGRNWENDEPYITVKNAAMDVVLPPNTIKYPTDNPNISPLIAPPTVYASATEMSNETAVDQPNFNVTWKFDVDTSFSYLVRLHFCDIVSKSLNELYFNVYINEKTAIPTLDLSSVTQALATPYYRDFVVNASLMTQEGIKIQVGASLARGGSGNAIMNGIEILKMSNSLDSLDGQFGQDGSNGGFSYRGAVAGVGFAMMFGAFVGLGAMVIRWHRRPQDWQKRNSFSSWLLPVHAGDSTFMSKNGSGKSNFSSMGMGLGRFFSFAELQEATKNFDKANIIGVGGFGNVYSGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMVGPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPNLVGTINPESLKKYADAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQEGKAEDVPPAVPAQAPAPVPDAAPAPVVAAPASSSALNEDVPNPEGNNRPAEGRAIDDHSGTLQFAKFSLNGR	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242780g00001	863	ProSitePatterns	Protein kinases ATP-binding region signature.	513	535	IPR017441	GO:0005524
	Stsc242780g00001	863	FunFam	Putative receptor-like protein kinase	33	189	-	-
	Stsc242780g00001	863	SMART	serkin_6	507	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc242780g00001	863	Gene3D	-	214	400	-	-
	Stsc242780g00001	863	Gene3D	-	33	188	-	-
	Stsc242780g00001	863	PANTHER	OS07G0166700 PROTEIN	493	785	IPR045272	GO:0004714\|GO:0006468
	Stsc242780g00001	863	MobiDBLite	consensus disorder prediction	801	815	-	-
	Stsc242780g00001	863	Pfam	Malectin-like domain	36	397	IPR024788	-
	Stsc242780g00001	863	CDD	STKc_IRAK	513	779	-	-
	Stsc242780g00001	863	SUPERFAMILY	Protein kinase-like (PK-like)	493	776	IPR011009	-
	Stsc242780g00001	863	MobiDBLite	consensus disorder prediction	791	850	-	-
	Stsc242780g00001	863	Pfam	Protein tyrosine and serine/threonine kinase	511	707	IPR001245	GO:0004672\|GO:0006468
	Stsc242780g00001	863	FunFam	Receptor-like protein kinase FERONIA	583	796	-	-
	Stsc242780g00001	863	ProSiteProfiles	Protein kinase domain profile.	507	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc242780g00001	863	Gene3D	Transferase(Phosphotransferase) domain 1	583	797	-	-
	Stsc242780g00001	863	Gene3D	Phosphorylase Kinase; domain 1	472	582	-	-
	Stsc242780g00001	863	FunFam	Receptor-like protein kinase FERONIA	213	400	-	-
	Stsc242780g00001	863	FunFam	receptor-like protein kinase FERONIA	471	582	-	-
	Stsc242780g00001	863	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	629	641	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242780g00001	Stsc-Chr242780	6007	8728	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242780g00001	28	863	Receptor kinase-like Gene Family	AT4G39110	65.243	0.0	1117

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc242780g00001		Malectin_like	1.5e-32	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242780g00001	-		-	tpra:123893803	1263.83