LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242778g00003	ATGGCTCCTAAAAGAGGTGGAAAAGGGCCAGTTCCAGCTTCGAAGAAGAAGCCTGAGAAGGTTACGAACCCTTTGTTCGAGAAGCGTCCCAAGCAGTTTAGGATCGGAGGAGCATTGCCGCCAAAGAGGGATTTAACCCGTTTCGTGAAGTGGCCTAAGACCACCCTTGACAAGAACCTTGCAACCAACCTTTTCAAGATACTTTTGAAGTACAGGCCAGAGGATAAAGCTGAAAAGGAGGAGAGACTTTTGAAAAGGGCCCAGGCTGAGACTGAGGGCAAAACCGTTGAAGCTAAGAAGCCCATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCTCAATTGGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTTTGGCTTCTAGCATTGTGTAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCCTTGGTTCGATTGTCCACAAGAAGACCGCATCTGTTTTGTGCTTGACCAGTGTCAAGAACGAAGACAAATTAGAGTTCAGCAGGGTCGTAGAGGCTATTAAGGCTAACTTCAACGACAAGTTCGACGAGTACAGAAAGAAATGGGGTGGCGGTGTCATGGGTTCCAAATCCCAAGCCAAAACTAAAGCCAAGGAGAGGCTTCTTGCTAAGGAGGCTGCTCAAAGGATGTCCTAG	705	0.4681	MAPKRGGKGPVPASKKKPEKVTNPLFEKRPKQFRIGGALPPKRDLTRFVKWPKTTLDKNLATNLFKILLKYRPEDKAEKEERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLLALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVVEAIKANFNDKFDEYRKKWGGGVMGSKSQAKTKAKERLLAKEAAQRMS	234

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242778g00003	234	ProSitePatterns	Ribosomal protein L7Ae signature.	142	159	IPR004037	GO:0042254\|GO:1990904
	Stsc242778g00003	234	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	91	181	IPR004038	-
	Stsc242778g00003	234	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	43	217	-	-
	Stsc242778g00003	234	PRINTS	Ribosomal protein L7A family signature	47	64	IPR001921	-
	Stsc242778g00003	234	PRINTS	Ribosomal protein L7A family signature	30	47	IPR001921	-
	Stsc242778g00003	234	FunFam	60S ribosomal protein L7a	43	209	-	-
	Stsc242778g00003	234	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc242778g00003	234	SUPERFAMILY	L30e-like	64	205	IPR029064	-
	Stsc242778g00003	234	Gene3D	-	53	228	IPR029064	-
	Stsc242778g00003	234	PRINTS	Ribosomal protein L7A/RS6 family signature	104	118	IPR018492	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242778g00003	Stsc-Chr242778	10829	12647	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242778g00003	1	234	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	74.903	1.21e-140	392

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242778g00003	K02936		-	jre:108984551	415.616

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