Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242778g00003 ATGGCTCCTAAAAGAGGTGGAAAAGGGCCAGTTCCAGCTTCGAAGAAGAAGCCTGAGAAGGTTACGAACCCTTTGTTCGAGAAGCGTCCCAAGCAGTTTAGGATCGGAGGAGCATTGCCGCCAAAGAGGGATTTAACCCGTTTCGTGAAGTGGCCTAAGACCACCCTTGACAAGAACCTTGCAACCAACCTTTTCAAGATACTTTTGAAGTACAGGCCAGAGGATAAAGCTGAAAAGGAGGAGAGACTTTTGAAAAGGGCCCAGGCTGAGACTGAGGGCAAAACCGTTGAAGCTAAGAAGCCCATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAACAAAGCTCAATTGGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTTTGGCTTCTAGCATTGTGTAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAGGCTCGCCTTGGTTCGATTGTCCACAAGAAGACCGCATCTGTTTTGTGCTTGACCAGTGTCAAGAACGAAGACAAATTAGAGTTCAGCAGGGTCGTAGAGGCTATTAAGGCTAACTTCAACGACAAGTTCGACGAGTACAGAAAGAAATGGGGTGGCGGTGTCATGGGTTCCAAATCCCAAGCCAAAACTAAAGCCAAGGAGAGGCTTCTTGCTAAGGAGGCTGCTCAAAGGATGTCCTAG 705 0.4681 MAPKRGGKGPVPASKKKPEKVTNPLFEKRPKQFRIGGALPPKRDLTRFVKWPKTTLDKNLATNLFKILLKYRPEDKAEKEERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLLALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVVEAIKANFNDKFDEYRKKWGGGVMGSKSQAKTKAKERLLAKEAAQRMS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242778g00003 234 ProSitePatterns Ribosomal protein L7Ae signature. 142 159 IPR004037 GO:0042254|GO:1990904
Stsc242778g00003 234 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 91 181 IPR004038 -
Stsc242778g00003 234 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 217 - -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Stsc242778g00003 234 FunFam 60S ribosomal protein L7a 43 209 - -
Stsc242778g00003 234 MobiDBLite consensus disorder prediction 1 27 - -
Stsc242778g00003 234 SUPERFAMILY L30e-like 64 205 IPR029064 -
Stsc242778g00003 234 Gene3D - 53 228 IPR029064 -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A/RS6 family signature 104 118 IPR018492 -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A/RS6 family signature 149 163 IPR018492 -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A/RS6 family signature 123 136 IPR018492 -
Stsc242778g00003 234 PRINTS Ribosomal protein L7A/RS6 family signature 139 149 IPR018492 -
Stsc242778g00003 234 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242778g00003 Stsc-Chr242778 10829 12647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242778g00003 1 234 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 74.903 1.21e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242778g00003 K02936 - jre:108984551 415.616