Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242767g00002 ATGTCTTCCGAAAACAAGGAACACCAATCCACATTCAATCCATACAGAACAATGATGTGTGATGTGTACATTAGTTCCGGATTGCAACAACCTGATTCTTTTACATCAGATCTCTCTCATGAACTCAAACTTGCAGGAGTATATGTTTTAAGGAACTATGGGCCCTACACTAATGACCTCATATTATCTGGCAAAATCGAAGGCTGCAGAGTTTGTATCATAGTTTTCACAATAGACTATGCTAAATCAACCTTGTGTTTGCAAGAGCTCCTGAAAATAATGGAGTGTCGGAATAGCAAAGGTCAGGAGGTTGTGCCCGTCTTCTTGGGCTTCTTACGTCCCTCAAAAGGATGCAATCAGAGCGATCATTTTGGAACAATTTTGTTAGATACTCTGGAAAGAAACTCAACAGATGAAAACAAGGTGTTGAGTTATAGTACCGCGCTTCAAGAAGCTTCTGCCATTTCACCCAGGTTTCAGCTGTCTAATATATGGAATAAAAGCAAAGTTATAGAGGATATTGTTAAACATGTTACCTCTTTGCTAGATTCAACAGAATTATTCGTTGCAGAGCATCCAGTGGGAGTAAACTCACGCGTGCAAGATTTGATCCAACTCATAAATAATCACAAATCAAAAGATGTTCTTGCAATAGCAATATGGGGAATGGCAGGAATAGGTACAACAACAATTGCTAAAGCCCTCTATAATCAAATTAGCTGCAATTTCGATGCAAGGAAGTTTGTCCCAAACATCAAGAAAAGGCTGAAGGCTTTGACAACAGTGTGGTCTCTACAAGACAGTCTTGGATTGCCGAAAAGTTTTTTCAACTCGAAGGTATTTCTTGTACTTGATGACGTGAGAAGTGAAAGAGAACTGGAAGTTTTGCCTGTAACTCCTGAACGGTTTGGTCCAGGTAGTATAGTAATCATCACGACAAGGATTATACATGATGGACTTCATAAGATTGGAGTTAATCATATATATAAAGTGAAACAAATGGACTACAACGAAAGCGTTGAGCTTTTAAGTTGGAGCGCATTTCAGAAAGCAACTCCTCAAAGAAGTTTTTCTGGGCTTATTAATTATGCAATTGAATATTCTGATGGACTGCCACTGGCTCTTGTGGCTGTTGGCTCTGCATTATCTGAAAAAGGTACACAGGAGTGGGAGAGTGTATTGGATAGCCTCGAAAGAGTTCCCCTTCAAGATGTATGGCAAATTTTAAAAGATAGCATTGATTCTGTTGGATTTGAAGAGAAGAAAATGTTTGTTGAACTAGCTTATTTGAAACATCGCTTTATTGTAATGGACCGAAATAATATAAGTAGGATATTACAAGAAGCTGGATATTGTGGGGCACCAACTGCAATATCACTTAAAATGCTTGAAGAGCATAGTCTTGTGTGGTTTGAAGAGGACAAGCTTTGCATGCATCGTTTGCTGCAACACATCGGAACAGAAATGTATCTCAAGGAATCATCCATTATTGAGCGTCAGCAAAGGCCATATGATGTATTCTTGAGCTTTCGAGGTAAAGACACTCGTTCGAAGTTCATCTCACATCTTCATGCATCTCTTGAAAATGCTGGTATCTATGTTTTCAAGGATGATGATGGGATTCCAAGAGGGGAAAATATCTCAATGTCACTTCTAAAAGCAATTAGAGAGTCTAAAATTGCTATCGTTATTCTGTCACCGAATTATGCTTTCTCAAGATGGTGTTTGCAAGAGTTGGAAGACATAATGAGATCTTATAGAAACAAAACTCAAAAGGTGGTGCCAGTGTTCTACCATGTAGATCCCTCAGAGGTGCGAAATCAAACCGGCAAGTTTGGAGAAGCTTTTCGAGGTCTTTTAAAAAGATCCTCAGGCAACGAGCAGAGTTGGAGGAAAGCACTAAGTGAAGTTGGGGGCATTGCAGGGATTGTCACCACCCAAAAATCAAGGAATAAAAGTGAGGATATTAAGAACATTGTTCAACATGTTACTCATATGCTAGACATGAAGCAATTGTTCGTCGCAAATCATCCGGTAGGAGTTGAACCTCGTGTTGAAGAGGTGATTGAACTGTTAAAAAGCCATCAAGAAGAAAATCCTCTAATATTAGGCATATGGGGAATGGGAGGAAGTGGTAAAACAACCATTGCCAAAGCGGTTTATAATAAAATGTTCCGTCAATTTGAAGGTCAATGCTTCCTCCTAAATATAAGAGAAGTTTGGGATCAAGATAAAGGCAGTCTTCACTTACAGCAACAACTTATTTCTGCTATCTTCAAAACAACGAAAATAAAGATAGAAAACACTGAATCTGGAAAATCAATATTAGAGGAAAGACTTGGCCAGAAAAGGATACTTCTTGTACTTGATGATGTGGACAAATTGGAGCAGCTTAATTCTTTAGCTGCAAGCCGTAAATGGTTTTGTCCTGGTAGCTTAATAATCATCACAACAAGAGATGAGCACCTTCTTCGTTGTCTTGAAATTAACAAGTTATATAGCATGAAAGAGTTAAATGACAAAGAATCCATGGAACTTTTTAGCTGGCATGCATTCAAAGAACCATGTCCAAAAGAAGAGTTTGCTTTACTTGCTAATGAAGTTGCTTCATACTGTGAGGGACTGCCACTGGCTCTTGAAGTGATTGGGTCACATTTGTTTAATAGAGAAGTATATGAATGGAGGAGCGTTTTGAAGAAACTCAAAACTATTCCCCACAATGATGTACACAAGAAGCTCAGAATAAGTTTTGATGGTTTGAGTGATGATAGAGAGAGGGAAATATTTCTCGATGTGGCATTTTTCTTTATTGGAATGGACAAAAATGATGTAGTTGATATATTAAATGGCTGTGGGCATTCCGCTGAAATTGAAATAAATGTTCTTATGGAACGATGCCTTATTACTGTGGACACCAAGAGAAAACTCGGCATGCATGGTTTGCTGCGAGACATGGGAAGAGAAATTATTCGCGAGAGTTTGCCAACGAAGCCTGAGAAACGGAGTAGGTTGTGGAATCCAGAGGAAGTGCTCAATGTATTATCAAAAGACATGGGAACAAAAGCTATCGAGGGACTTACTTTGAACCTGCCAAAGTCAGTGAATCCAACTAAGTTAAAGACGGAAGCATTTAAGGAGATGAAGAGACTCAGATTGCTTCAGTTTGTGAATGTGCAACTTGTTGGAGACTTCAAATACATTTCAACTGATCTTCGATGGTTGTGTTGGCATGGATGTCCTTCAGAATATGCAACTGCAAACTTTGATCAAGCAAATTTAGTTGCTATTGACTTCAAATATAGCAAACTCGAACTAGTATGGAGGAAGGGTCAGATGATGAAGCAGCTAAAAATTCTGAATCTTAGTCATTCTCAACACTTGACACAAACTCCTGACTTTTCAAATTTGCCCAATCTTGAAAAGTTAATACTCAAATATTGCCCAAAGTTGACTTCGGTTTCTCATACCATTGGATATCTCAAGCAAGTTCTTCTAATCAATTTCAAAGGGTGTTCAAGTCTTCGTGTACTTCCTAGAAGCATCTACAAGTTGAAATCTCTCAAGACTCTTATTCTTTCAGGATGTTCATTGATTGATAAGTTAGAAGAAGATGTAGAACAGATGGAATCATTGACAACTTTGATGGCTGATAAAACTGCCATAACACAAGTGCCTCATGCATTACTAAGATTAAAGAGCATTGTGTATATTTCTTTGTGCGACTTTCAAGGATTATCGCGCAATGTGTTTCCTTCAATCATTTGGTCATGGACCTCTCCAACAAATAATTTCTCACCCCAAGTGCAATCAGTTCTAGACTTATCAAATATTCTTTCCTTAGTAGTACCAAATAGCAATTCTCAAGGTCTATCATCCATCATCAGAGAGCTTCCACAAGTCCAGAAAGTTAAGCTGGAATCTGGGTCACAATTTCAGATGACAGGAGATGTAGCTTCTGATACTTTTAATGTCACAAACTGCAATGAAATGAAAATAACATCAAGTGCATCAAATATCTCAAAAGGGAGTACCTCATCATTAGGTGGTAGTTGCAACGAAGGTGTCATTCTTGAATCAGAAAATTCTCTGAGTTCAATTTTAATCCAAATGGGATTGAATTGTTCTGTCACGGAGGTGCTTAGAGAGAGTATTTTAGAGAAATTTAGTGCCAGAGTATCTGGAGATTGTTTGCTTCCTGGCAACAAGAATCCAGATTGGTTAACATTCAGTGGTGAAGATTCTTTGGTAACTTTCAATGTTCCACAGTTGAATGGGCGTAAGTTAAAGACAGCGTTGTTGTGTATAGTCTATTCTTCTTCCCCAAACAATGCACCATCTGAAGGCTCTATTATAAAAAATCTGTTGATCCTAAATTACACAAAGACCACTCCTTATATCTACGATGGAGATACACTAGCTTCATTTAGAGATGAGGAATGGCAGAAAGTAATATCAAACCTTGAGGCTGGTGACAAAGTGCAGATTGTTGTTGCTGCTGGGTTAGGAATCACAGTGAAGAAGACTGCAGTTTATCTCATATATTGTGATTTGTGA 4554 0.3832 MSSENKEHQSTFNPYRTMMCDVYISSGLQQPDSFTSDLSHELKLAGVYVLRNYGPYTNDLILSGKIEGCRVCIIVFTIDYAKSTLCLQELLKIMECRNSKGQEVVPVFLGFLRPSKGCNQSDHFGTILLDTLERNSTDENKVLSYSTALQEASAISPRFQLSNIWNKSKVIEDIVKHVTSLLDSTELFVAEHPVGVNSRVQDLIQLINNHKSKDVLAIAIWGMAGIGTTTIAKALYNQISCNFDARKFVPNIKKRLKALTTVWSLQDSLGLPKSFFNSKVFLVLDDVRSERELEVLPVTPERFGPGSIVIITTRIIHDGLHKIGVNHIYKVKQMDYNESVELLSWSAFQKATPQRSFSGLINYAIEYSDGLPLALVAVGSALSEKGTQEWESVLDSLERVPLQDVWQILKDSIDSVGFEEKKMFVELAYLKHRFIVMDRNNISRILQEAGYCGAPTAISLKMLEEHSLVWFEEDKLCMHRLLQHIGTEMYLKESSIIERQQRPYDVFLSFRGKDTRSKFISHLHASLENAGIYVFKDDDGIPRGENISMSLLKAIRESKIAIVILSPNYAFSRWCLQELEDIMRSYRNKTQKVVPVFYHVDPSEVRNQTGKFGEAFRGLLKRSSGNEQSWRKALSEVGGIAGIVTTQKSRNKSEDIKNIVQHVTHMLDMKQLFVANHPVGVEPRVEEVIELLKSHQEENPLILGIWGMGGSGKTTIAKAVYNKMFRQFEGQCFLLNIREVWDQDKGSLHLQQQLISAIFKTTKIKIENTESGKSILEERLGQKRILLVLDDVDKLEQLNSLAASRKWFCPGSLIIITTRDEHLLRCLEINKLYSMKELNDKESMELFSWHAFKEPCPKEEFALLANEVASYCEGLPLALEVIGSHLFNREVYEWRSVLKKLKTIPHNDVHKKLRISFDGLSDDREREIFLDVAFFFIGMDKNDVVDILNGCGHSAEIEINVLMERCLITVDTKRKLGMHGLLRDMGREIIRESLPTKPEKRSRLWNPEEVLNVLSKDMGTKAIEGLTLNLPKSVNPTKLKTEAFKEMKRLRLLQFVNVQLVGDFKYISTDLRWLCWHGCPSEYATANFDQANLVAIDFKYSKLELVWRKGQMMKQLKILNLSHSQHLTQTPDFSNLPNLEKLILKYCPKLTSVSHTIGYLKQVLLINFKGCSSLRVLPRSIYKLKSLKTLILSGCSLIDKLEEDVEQMESLTTLMADKTAITQVPHALLRLKSIVYISLCDFQGLSRNVFPSIIWSWTSPTNNFSPQVQSVLDLSNILSLVVPNSNSQGLSSIIRELPQVQKVKLESGSQFQMTGDVASDTFNVTNCNEMKITSSASNISKGSTSSLGGSCNEGVILESENSLSSILIQMGLNCSVTEVLRESILEKFSARVSGDCLLPGNKNPDWLTFSGEDSLVTFNVPQLNGRKLKTALLCIVYSSSPNNAPSEGSIIKNLLILNYTKTTPYIYDGDTLASFRDEEWQKVISNLEAGDKVQIVVAAGLGITVKKTAVYLIYCDL 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242767g00002 1517 ProSiteProfiles TIR domain profile. 502 667 IPR000157 GO:0007165
Stsc242767g00002 1517 Gene3D - 669 832 IPR027417 -
Stsc242767g00002 1517 Gene3D Ribonuclease Inhibitor 1007 1262 IPR032675 -
Stsc242767g00002 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 425 IPR027417 -
Stsc242767g00002 1517 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 128 IPR035897 -
Stsc242767g00002 1517 Gene3D - 837 921 IPR042197 -
Stsc242767g00002 1517 Gene3D - 334 419 IPR042197 -
Stsc242767g00002 1517 SMART AAA_5 699 834 IPR003593 GO:0016887
Stsc242767g00002 1517 SUPERFAMILY "Winged helix" DNA-binding domain 909 1014 IPR036390 -
Stsc242767g00002 1517 Gene3D - 501 668 IPR035897 -
Stsc242767g00002 1517 Gene3D - 18 183 IPR035897 -
Stsc242767g00002 1517 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 504 1330 IPR044974 GO:0006952
Stsc242767g00002 1517 Pfam NB-ARC domain 200 416 IPR002182 GO:0043531
Stsc242767g00002 1517 Pfam NB-ARC domain 683 907 IPR002182 GO:0043531
Stsc242767g00002 1517 SUPERFAMILY Toll/Interleukin receptor TIR domain 499 642 IPR035897 -
Stsc242767g00002 1517 FunFam Disease resistance protein (TIR-NBS-LRR class) 500 669 - -
Stsc242767g00002 1517 SMART till_3 19 155 IPR000157 GO:0007165
Stsc242767g00002 1517 SMART till_3 503 640 IPR000157 GO:0007165
Stsc242767g00002 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 931 IPR027417 -
Stsc242767g00002 1517 SUPERFAMILY L domain-like 1037 1308 - -
Stsc242767g00002 1517 Gene3D - 184 319 IPR027417 -
Stsc242767g00002 1517 PRINTS Disease resistance protein signature 1182 1198 - -
Stsc242767g00002 1517 PRINTS Disease resistance protein signature 779 793 - -
Stsc242767g00002 1517 PRINTS Disease resistance protein signature 872 886 - -
Stsc242767g00002 1517 PRINTS Disease resistance protein signature 702 717 - -
Stsc242767g00002 1517 Pfam TIR domain 504 666 IPR000157 GO:0007165
Stsc242767g00002 1517 Pfam TIR domain 61 179 IPR000157 GO:0007165
Stsc242767g00002 1517 ProSiteProfiles TIR domain profile. 18 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242767g00002 Stsc-Chr242767 10792 17028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242767g00002 69 552 WRKY Transcription Factor Family AT4G12020 24.008 5.49e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242767g00002 - - ahf:112749517 1984.53