Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242763g00001 ATGAACAAAGGAGCTTGGTCCAAACAAGAAGATCAAAAACTCATTGACTATATCAACAAACATGGCGAGGTTTGTTGGCGTACCCTCCCTCAAGCTGCAGGTCTATTAAGGTGCGGCAAAAGCTGTAGGCTAAGATGGATAAACTATTTGCGCCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCTCTACTAGGCAACCGGTGGTCGTTAATAGCGGGAAGATTGCCCGGAAGAACGGATAATGAAGTGAAGAATTATTGGAACTCTCACATAAAAAGGAAGCTTATTAGCAAAGGCATTGATCCAAATAATCATCGTTTAATAAGCCACAAAAAGATAATCCCTCCACCCATGTCCGATTGTTCAAAATCATCATCTGGTGGATTATTGAAAACAAACAATAATAATAAATCCAATGTTGAAAACTATGGCTATCAAGTAGTCTCATCAGATGAGGATGAATCTAATAATAATAATAATAACAATAATGCGTTATTATTGCCGGATTTAAACCTTGATCTCACTATCAGCATTCCTTCATCATCATCATCATCAGCTGTAAACAAGAATCTGAAATCAACAATTCATCATCAACATGAATCAAATTCTTCAAGGCGGGAACGGAACTTATTGGCTGCTAATAATTCCCCAACGCTTCTTCTATTTCAGTAA 702 0.3775 MNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLISHKKIIPPPMSDCSKSSSGGLLKTNNNNKSNVENYGYQVVSSDEDESNNNNNNNNALLLPDLNLDLTISIPSSSSSSAVNKNLKSTIHHQHESNSSRRERNLLAANNSPTLLLFQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242763g00001 233 Pfam Myb-like DNA-binding domain 56 100 IPR001005 -
Stsc242763g00001 233 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Stsc242763g00001 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Stsc242763g00001 233 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Stsc242763g00001 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Stsc242763g00001 233 MobiDBLite consensus disorder prediction 217 233 - -
Stsc242763g00001 233 FunFam MYB-related transcription factor 2 55 - -
Stsc242763g00001 233 MobiDBLite consensus disorder prediction 129 150 - -
Stsc242763g00001 233 SMART sant 2 52 IPR001005 -
Stsc242763g00001 233 SMART sant 55 103 IPR001005 -
Stsc242763g00001 233 FunFam MYB transcription factor 57 118 - -
Stsc242763g00001 233 MobiDBLite consensus disorder prediction 192 233 - -
Stsc242763g00001 233 Gene3D - 58 123 - -
Stsc242763g00001 233 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Stsc242763g00001 233 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Stsc242763g00001 233 CDD SANT 58 101 IPR001005 -
Stsc242763g00001 233 Gene3D - 3 55 - -
Stsc242763g00001 233 MobiDBLite consensus disorder prediction 122 150 - -
Stsc242763g00001 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Stsc242763g00001 233 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242763g00001 Stsc-Chr242763 15726 17261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242763g00001 2 192 MYB Transcription Factor Family AT4G09460 56.931 4.35e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242763g00001 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242763g00001 K09422 - gmx:100814923 267.314