Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242760g00002 ATGGAGGAAGCACTCAGGCGCCTCAACGGCATGCCCCCCTTTCCCGAACCTCCTCCCAACAACCCCAAAACCTCCTCTCCTTCCCCTCTCCCTACCAAGCGCACCCTCCGAGACACCGCCACCGCTCCCCCCACCCCCGCACCCATGAGGTACCGCGGCGTTAGGCGCAGACCATGGGGCCGTTACGCCGCCGAGATAAGGGACCCTCAGTCCAAGGAACGCCGCTGGCTTGGCACTTTTGACACCGCTGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCAGAGCCATGCGTGGCCTAAAGGCCAGGACTAACTTCGTCTACCCTACTTCTCCTCCTCATCACCCTTCTTCCATCGCCCTCACCAACAACCCTAACAACCTCCTTAACCGCCATAACCACCTCTTCACTCATCACCACTTCACCTTCCCTAATCATAATAACCAACTCTTCTTCAACGCCCATAACCGCCAGTTTGGCGGTTATTGGTCTGACCCCTTCTCTTCTTCAACCTTCCACCAACAACCTCCTTCAAACCTTGATTCCATCAACATGCTTCTCCTCCGAGACTTCATAGCCTCTTCTTCCCCTGACCACCATTTGTCCTACACCAGGGGTAGTTTTGTCAATTCACATCCTGCAGCCAATGTTGCTTGTTCTGACAACACAAGCAATCTCTCTTGTGGCGGTGGAAGCAACAACACCGCCGATAACACTAACAATAACAATAATAATAATGAAGCTGATCATGGCGGTGGCGAAGAAGACTCAAAGGAGCAATTCTTTGAAGGTTCAGAGTCATCAGGGTTGTTGGAAGAAGTAGTTAATGGTTTCTTGAGGAAAAAGCCAAAGCCTAACAAATTCGAGAGATTTTCAGATGCTTCTTGCAACTCATCATTTCCTCCTCCTCTTCCTCCTCCTGCTCTGGCTTTCTCCGGCGAGTCGAAGAAAGACGAGGGTTTCGGCGTTCATTTGGATCATCAACAGGGTTTCCAATACATGCAGCAGCTTGGTGGAGGTTTCAATAATGGTTTTAGCAATATAGTTATGCAGCAGCCTAATAACATAGCTCTTCAAGAAAATAATAACAACCAAATCATGACGATGATGATGATGATCAATAATGATCATTATAATCATGCAGAACCAGATTTCTCTACCGTAGAAAACACTCTTCATCAGGATGCAAAATTCTGA 1197 0.4946 MEEALRRLNGMPPFPEPPPNNPKTSSPSPLPTKRTLRDTATAPPTPAPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHHPSSIALTNNPNNLLNRHNHLFTHHHFTFPNHNNQLFFNAHNRQFGGYWSDPFSSSTFHQQPPSNLDSINMLLLRDFIASSSPDHHLSYTRGSFVNSHPAANVACSDNTSNLSCGGGSNNTADNTNNNNNNNEADHGGGEEDSKEQFFEGSESSGLLEEVVNGFLRKKPKPNKFERFSDASCNSSFPPPLPPPALAFSGESKKDEGFGVHLDHQQGFQYMQQLGGGFNNGFSNIVMQQPNNIALQENNNNQIMTMMMMINNDHYNHAEPDFSTVENTLHQDAKF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242760g00002 398 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Stsc242760g00002 398 MobiDBLite consensus disorder prediction 1 54 - -
Stsc242760g00002 398 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 256 - -
Stsc242760g00002 398 MobiDBLite consensus disorder prediction 11 26 - -
Stsc242760g00002 398 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Stsc242760g00002 398 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Stsc242760g00002 398 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Stsc242760g00002 398 MobiDBLite consensus disorder prediction 230 267 - -
Stsc242760g00002 398 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Stsc242760g00002 398 MobiDBLite consensus disorder prediction 230 248 - -
Stsc242760g00002 398 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Stsc242760g00002 398 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Stsc242760g00002 398 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Stsc242760g00002 398 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242760g00002 Stsc-Chr242760 12892 14088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242760g00002 1 285 AP2-EREBP Transcription Factor Family AT1G24590 38.435 1.54e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc242760g00002 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242760g00002 - - aip:107639893 374.015