Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242759g00004 ATGGGAGAAACAGTGTTGAGCAAGGCTAAGCCATATTTACTAACGGTGGGGCTTCAATTTGGGTTGGCAGGAACGTACATATTCTCCATGGCAAGTCTCAACCATGGAATGAGTCGTTATGTCTTTGTTGTTTATCGCAATCTCATTGCTGCTATTTCCCTCGCTCCTTTTGCATTCTTTTTTGAAAGGAAGGTTAGGCCAAAGATGACACTATCTGTATTTATACGGATTCTGGTCCTTGGACTTCTGGAGCCAGTGATAGACCAAGGATTCACATTCTTAGGGATGCAATACACTTCTGCTTCATTTGCATCTGCCATTATGAATGCTGTCCCATCTGTTACCTTTGTCTTAGCCGTCATTTTCAGGTTAGAGCGGGTAAACGTGAAAGAAGTGCGAAGCCTAGCAAAGTTGATTGGGACATTGGTTACATTTTGTGGCGCATTGGTCATGATTCTCTACAAAGGCCCTGTTATGCACCTTTTTGGTTCTTCTCAAATCCATGATGATCACCACCAACACCATGATTCAACTCACTCCACTCAGACCCTCTCTCATTGGGTCTCAGGAACTCTCTTTCTTTTTCTCGGTTGTGTCGCTTGGTCTTCCTTCTACATTTTACAGTCCATAACGCTAAAAAGTTACCCGGCCGAAATGTCACTCTCGTCTTTGATATGCTTGGCGGGTGCATCGCAAGCTTCCGTGGTGGCCGCAGTGGCGGAGCATCACTCTGGCGCTCGCCCATGGATCGTTGGATGGGACTTTAGGCTCTATGGTCCTCTTTACTCGGGTATAGTAAGCTCAGCGATTGCGTATTACGCGCAAGGGTTGGTGTTACAAAGCAAGGGCCCAGTTTTTTTAACGGCATTTAATCCCCTTTGCATGATCATTGTTTCCATATTGGGCTATTTTCTTCTCTCAGAGACTCTCCACTTGGGCAGCATTATTGGGGCCATTATTATCGCAGTGGGTCTTTACTCTGTGGTGTGGGGAAAAGGAAAAGACAGTTCAAACCCCACTATGACCCTCCCCACAACAGAAACAACGAAGCAAACAGAGTTACAACAACAACTTCCAATTAAGAACACTGCTGCCTCAATGTCACAGATTTCCTAA 1116 0.4534 MGETVLSKAKPYLLTVGLQFGLAGTYIFSMASLNHGMSRYVFVVYRNLIAAISLAPFAFFFERKVRPKMTLSVFIRILVLGLLEPVIDQGFTFLGMQYTSASFASAIMNAVPSVTFVLAVIFRLERVNVKEVRSLAKLIGTLVTFCGALVMILYKGPVMHLFGSSQIHDDHHQHHDSTHSTQTLSHWVSGTLFLFLGCVAWSSFYILQSITLKSYPAEMSLSSLICLAGASQASVVAAVAEHHSGARPWIVGWDFRLYGPLYSGIVSSAIAYYAQGLVLQSKGPVFLTAFNPLCMIIVSILGYFLLSETLHLGSIIGAIIIAVGLYSVVWGKGKDSSNPTMTLPTTETTKQTELQQQLPIKNTAASMSQIS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242759g00004 371 Pfam EamA-like transporter family 13 152 IPR000620 GO:0016020
Stsc242759g00004 371 Pfam EamA-like transporter family 189 329 IPR000620 GO:0016020
Stsc242759g00004 371 PANTHER WAT1-RELATED PROTEIN 11 342 IPR030184 GO:0016020|GO:0022857
Stsc242759g00004 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 334 - -
Stsc242759g00004 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242759g00004 Stsc-Chr242759 14211 18570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242759g00004 6 354 Nodulin-like Gene Family AT2G37460 48.857 3.31e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242759g00004 - - gmx:100812537 488.804