Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242749g00001 ATGAGGATGTTGCCTGTTTGCTCAGCAACCCCAAGCTACTCCTCTTCTTCCCAGATTCCCTTGTTTGGGGGATTGCAACCCTTGTACCCGGTTAGAAAGGATCTTGAGAGCAGATGTGTGGGAGAAGAAGGTGTGAATCTGAGTTTTCTGTATGGAACTCACACTCACTCGTCAAAGAACTCATTTGCAGTACAAGCTACAAAGACCGGGTCGGGTTTTTTTATTTCTCCAAGTGAACCAGGGTACCTTACAAACACATGGGGTTATTTGTCAACTGTGCCAGAGGATGTTGTGGACTTCGCAGAGCAGTCAGCTGAAGGATCTAACACATTAACAGTGCCAGTGCAACCTGAAACACTATCAAGTACTGATGTAATACCAGATAATTTCACTTCTACATCTGGGCCTGATTCATATAATGTGGACAATGAATCAGTAGCCAGTGCAAAAGCTAGTGTTGGTGATCTCGTTGCTGGGATCAATGGCTCAATTAATAAGGGAGAAACTGCCTTACGGAACTCACTAGATACAGTTACTTCTTTTATAGATTCTATTGTTAAAAATGCTACTTCGTCTGCAGATAATGCTTTTAGTAAGGCATTTTCTTCTGTAGATAAAACGGGGGAACTAACAAAGCAGAAAATTACTGGCTTTTCAAGCGAGCTAAGCGGAATAACTAACAAGGTACCTGCTGTGGTTGTTGATGTGTTGCGCCGCACAATCATAGCTGTAGAGAGTTCTTTAGTAAGTGGAGCATCATACACTGTCTATCTTTACGGGTCAGCCAAGGAGCTCCTTCCTCCAGGGATAAGGGATACAGTCAATGTATATGAAGACAAAACAGCAGATATCTTGAGGCCTATTGGGCCTGCATCTCAACAGGTATACATGGCTATATATTCGCTGGAGAAGAATCTTGGGTTGGATCCAAATGACCCAATTGTTCCATTTGGTGTTTTTGTGGGCTCTTCAGCAACAATATGGGCTTTTTATTGGTTGTGGACATATGGTGGTTACTCTGGAGATTTATCCCCTAAATTGGCAATGGAGCTTTTGGCTGGGGACAAAGATGCGACACTGATAGATGTCCGCAATGAGGATTTGCTAGAAAAAGATGGTATTCCTGATATTCGACGGTCTGCTCGGTTTAGATATGCCAATGTGACTCCACTTGAGGTTGATGGCACTTTACTGAAGATGCTGAAAAGTGGTAGAGACCTTGATGACTCCTTGGTCGCTGCTATTATTCGAAATTTGAAGATTGTTAAGGACAGTTCCAAGGTTATCATTATGGATGCTGATGGTACGCGTTCTAAAGGCATTGCACGTTCCTTGAGGAAACTTGGGGTCAAGAATTCATACATGGTTCAAGGTGGCTTTCAGTCTTGGGTGAAAGAAGGTCTCCGCATCAAGGAGCTTAAACCTGAGACAGCACTTACCATACTTAATGAGGAAGCTGAAGCAATTCTGGAGGATGTTAGTCCTTCTCCTCTTCAACTTCTAGGTTATGGCTTGGCTGTTATTGCTGGGTTCTATGGAATATTAGAGTGGGAGAAGACATTACAGTTGATTGGAGCAGTTGGCCTTGGTTTGACTGTCTATGTGCGAGTTTCTTCATATGAGAGCTCAGAAGATTTGAAGCAAGATGTGAGGTTATTGCTTGCTCCTGTTAGAGTCGGAGCTCAAGCGGTCTCATGGGCTGCCGGAAAATTAGATTCGAACCGCATAGGGCTTCCTACATCACCTTCATCATTAGATGTTCAGAACCGAGTACTACAAGCTGCCGCAAAACACGAATCTCAACCATCTGACAGTGAAGGGAACAACCAAGATCAATCCCCTGAGAAGACAGTTTCTCTCAATCAGAATGTATGA 1875 0.4347 MRMLPVCSATPSYSSSSQIPLFGGLQPLYPVRKDLESRCVGEEGVNLSFLYGTHTHSSKNSFAVQATKTGSGFFISPSEPGYLTNTWGYLSTVPEDVVDFAEQSAEGSNTLTVPVQPETLSSTDVIPDNFTSTSGPDSYNVDNESVASAKASVGDLVAGINGSINKGETALRNSLDTVTSFIDSIVKNATSSADNAFSKAFSSVDKTGELTKQKITGFSSELSGITNKVPAVVVDVLRRTIIAVESSLVSGASYTVYLYGSAKELLPPGIRDTVNVYEDKTADILRPIGPASQQVYMAIYSLEKNLGLDPNDPIVPFGVFVGSSATIWAFYWLWTYGGYSGDLSPKLAMELLAGDKDATLIDVRNEDLLEKDGIPDIRRSARFRYANVTPLEVDGTLLKMLKSGRDLDDSLVAAIIRNLKIVKDSSKVIIMDADGTRSKGIARSLRKLGVKNSYMVQGGFQSWVKEGLRIKELKPETALTILNEEAEAILEDVSPSPLQLLGYGLAVIAGFYGILEWEKTLQLIGAVGLGLTVYVRVSSYESSEDLKQDVRLLLAPVRVGAQAVSWAAGKLDSNRIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGNNQDQSPEKTVSLNQNV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242749g00001 624 SMART rhod_4 344 469 IPR001763 -
Stsc242749g00001 624 Pfam Rhodanese-like domain 345 465 IPR001763 -
Stsc242749g00001 624 CDD RHOD 348 464 - -
Stsc242749g00001 624 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 3 621 IPR044690 GO:0009704|GO:0071277|GO:0090333
Stsc242749g00001 624 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 328 470 IPR036873 -
Stsc242749g00001 624 MobiDBLite consensus disorder prediction 593 624 - -
Stsc242749g00001 624 Gene3D - 339 493 IPR036873 -
Stsc242749g00001 624 ProSiteProfiles Rhodanese domain profile. 354 472 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242749g00001 Stsc-Chr242749 3025 9925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242749g00001 316 433 Sulfurtransferasese or Rhodanese AT5G23060 26.190 2.04e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242749g00001 - - gmx:100786123 932.169