Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242748g00001 ATGTGCAAAAAGAGTTACTATAGAGGCATCAGATATGCGCACGAACCACCATCACATTCACAACTCTCCCGCTTCTTGCTAGTGTGCGCACTTGTTGCCTTGCGCGCGCCGGTAGCGCAATACCCTAGCCTACGCACCCCCGCCACTCACCTCACTATCGATACCATCACCGACCTCCACCACAACCATCACCCTTCCATAAATCGCAACAGAGCTCAGATCTCGCGTTCTTCCAATCGCTCACGCATATCGAAGGCGCGTGTCTACACCGACGTCAACGTTCTCCGCCCCAAAGAGTTCTGGGATTACGAGTCCCTCAACGTCCAATGGGGTGATCAACATGATTATAAAGTTGTAAAAAAAGTCGGAAGGAGGAAGTATAGTGAGGTTTTCGGAGGCATAAATGTTAACAGCAACGAGCGGTGTATAATCAAGATCCTCAAGCCTGTCAAAAAGAAGAAGATTAAGAGAGAGATAAAAATACTTCAGAACCTCTGTGGGGGCCCAAATATTGTCAAGCTTCTAGATATTGTTAGAGATCAACACTCCAAAACTCCTAGCATAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGGCTGCTTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGATTACTGCCATTCACAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCATTTAATAGATTGGTGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCATCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGTTTTGCAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATATTTGCTGGAATGATATTTTGCAAGGAGCCTTTCTTTAATGGTCATGACAATCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAATTGAATGCATACCTGGATAAGTATCACTTGGAGCTTGATCCTCAACTTGATGCGCTTGTTGGAAGGCACAGTTGCAAGCCGTGGTCAAAATTCGTTAATGCAGATAACCAGCATCTTGTGTCTCCAGAGGCCATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAGGATAGGCTAACAGCTAGAGAAGCAATGGCACATCCATATTTCTCTCGGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 1248 0.4327 MCKKSYYRGIRYAHEPPSHSQLSRFLLVCALVALRAPVAQYPSLRTPATHLTIDTITDLHHNHHPSINRNRAQISRSSNRSRISKARVYTDVNVLRPKEFWDYESLNVQWGDQHDYKVVKKVGRRKYSEVFGGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSIIFEYVNSTDFKVLYPTLAAYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLHLIDWCLAEFYHPGKEYNVRVASRYFKGPELLVVLQDYDYSLDMWSLGCIFAGMIFCKEPFFNGHDNHDQLVKIAKVLGTDELNAYLDKYHLELDPQLDALVGRHSCKPWSKFVNADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSRVRAAESSRMRTQ 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242748g00001 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Stsc242748g00001 415 FunFam Casein kinase II subunit alpha 193 404 - -
Stsc242748g00001 415 FunFam Casein kinase II subunit alpha 102 192 - -
Stsc242748g00001 415 Pfam Protein kinase domain 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242748g00001 415 PANTHER CASEIN KINASE II SUBUNIT ALPHA 66 411 IPR045216 GO:0004674|GO:0006468
Stsc242748g00001 415 SMART serkin_6 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242748g00001 415 ProSiteProfiles Protein kinase domain profile. 116 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242748g00001 415 CDD STKc_CK2_alpha 97 401 IPR045216 GO:0004674|GO:0006468
Stsc242748g00001 415 SUPERFAMILY Protein kinase-like (PK-like) 85 404 IPR011009 -
Stsc242748g00001 415 Gene3D Transferase(Phosphotransferase) domain 1 193 401 - -
Stsc242748g00001 415 Gene3D Phosphorylase Kinase; domain 1 116 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242748g00001 Stsc-Chr242748 6789 17515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242748g00001 116 401 Core Cell Cycle Gene Families AT1G76540 28.339 2.91e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Stsc242748g00001 Pkinase 1.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242748g00001 K03097 - gmx:100819679 669.848