Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242742g00006 ATGTCCGGCACCAGGGCACCTCCCGCCGCTGCTAGCCCGCCGGACCAGATCATGCGGCGCCAACTTCCCCTCTCCACCACGAAGCCGCCCTTTTCCGTCTCTGGTGATTACCACCGCTTTGCCCCCGACCACCTCCACCACAACCGCCGAACTGTTGACCACGAACCCGAAGCCATCGTTGTTAAGTCTTGCCAATTGAAGCGGAAGAGTGACACATCAGATTTTGAAGCTGATTCTGGTGATAGGGTGAATCCTGTATCCATGGGAGCAGCTAATAATCCTTTACAGACGCCTAAATCTGGAAAAATAGGGAAGGGTGGCAAATCCTCCAGGCTTACTAAATGCCCCCCAGGTCCAAATATTGGATCTCCTTCAGGAAATAATCTCACTCCTGTTGGCCCATGTCGTTACGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATCTGATCAAGCAGGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGAATATATGACATAACAAATGTTCTCGAAGGGATTGGCCTTATAGAAAAGAAACTAAAAAACAGAATTCAATGGAAAGGACTTGATGTTTCAAGACCAGGAGAGCCTGAAGATAGTTTTTCTAATTTACAGGCAGAAGTTGAAAATCTTACCATGGAGGAGCACCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGTGACCTTTGTGAAAATGAAGATAGTGAGAAGTTGCTTTTTGTTACTGAGGAAGATATAAAGAACTTGCCATGCTTCCAGAATGAAACCTTGATTGCAATCAAAGCTCCACATGGCACCACTCTGGAGGTTCCGGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAGTTTGAAGAGAAGTTTGAGGAGATTAATGGTGCAGATGTTGCACCCAAATTTCAACCTACTCCAGAATTTAACAACCATCGACCAACTGTGGTTGTAGAGGACAACGGCAAAGACATTGCAGTGCAGGGACAAGATGGTCAAGGGCCTAGTTCTGATTTTTCTTCTGCGCAAGACTTTGTGAGTGGGATCATGAAAATCGTTCCTTCAAATGTTGATAGCGATGTTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGTTGTCCAATTGAATGAACTGGGCACGCTTCACGATGATTTTTGTACGACTCGAGACCGTGCTATAACTCCATCTGATACTTCGAATGTAAATGAAGCTACTGCAGCATCAAACCCTGCTGGGGGTTGA 1368 0.451 MSGTRAPPAAASPPDQIMRRQLPLSTTKPPFSVSGDYHRFAPDHLHHNRRTVDHEPEAIVVKSCQLKRKSDTSDFEADSGDRVNPVSMGAANNPLQTPKSGKIGKGGKSSRLTKCPPGPNIGSPSGNNLTPVGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEPEDSFSNLQAEVENLTMEEHRLDEQIREMQERLRDLCENEDSEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGADVAPKFQPTPEFNNHRPTVVVEDNGKDIAVQGQDGQGPSSDFSSAQDFVSGIMKIVPSNVDSDVDYWLLSDADVSITDMWRTESVVQLNELGTLHDDFCTTRDRAITPSDTSNVNEATAASNPAGG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242742g00006 455 SUPERFAMILY E2F-DP heterodimerization region 214 318 IPR037241 -
Stsc242742g00006 455 FunFam E2F transcription factor 1 130 203 - -
Stsc242742g00006 455 CDD E2F_DD 212 318 IPR032198 GO:0046983
Stsc242742g00006 455 Coils Coil 152 172 - -
Stsc242742g00006 455 Coils Coil 214 248 - -
Stsc242742g00006 455 Gene3D - 209 318 - -
Stsc242742g00006 455 PANTHER TRANSCRIPTION FACTOR E2F 86 415 IPR015633 GO:0000978|GO:0006357
Stsc242742g00006 455 MobiDBLite consensus disorder prediction 436 455 - -
Stsc242742g00006 455 Gene3D - 131 203 IPR036388 -
Stsc242742g00006 455 SUPERFAMILY "Winged helix" DNA-binding domain 136 199 IPR036390 -
Stsc242742g00006 455 MobiDBLite consensus disorder prediction 1 38 - -
Stsc242742g00006 455 Pfam E2F/DP family winged-helix DNA-binding domain 138 201 IPR003316 GO:0005667|GO:0006355
Stsc242742g00006 455 SMART E2F_TDP_2 136 201 IPR003316 GO:0005667|GO:0006355
Stsc242742g00006 455 MobiDBLite consensus disorder prediction 70 127 - -
Stsc242742g00006 455 Pfam E2F transcription factor CC-MB domain 217 317 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242742g00006 Stsc-Chr242742 11454 16095 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242742g00006 19 454 E2F-DP Transcription Factor Family AT5G22220 55.202 2.76e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc242742g00006 E2F_CC-MB 5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242742g00006 K06620 - gmx:100819817 668.307