Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242731g00003 ATGGCTGAGGAGGGTTTTGAGGGTTATCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTAGTTGTGGCTCACAACCAACATCAACATCAACAACAACAACTAAATCTTGTTGAATCTTCTTCCACTCCTACAACTACTACTAATAATTCTACTACTACTTGGTATGATCCTTCTTCACTCCTTCAAGTTCATCACGGTAATTTCCTCCAACACAACAACGAAACTGCAGTGAAGAAAGAGGAACAGCAACGTTCTAGTTTCATGATGGGATTTGGTGTAGTAACCGCCATGAATAACGCTTCTTCCTCTTCTTCTTCTCCTTCTTCTAACTCCTCTTCGGTTTCCCATCACCACCACCATGCTTACATGGATCCACAATCTTCTTCTACTTTGCATTTGAATAACCCTTCAATTCACGTTTTCGGGAACACCACCACCACCACCAACAACAACAACCCTTCGTTTCTCTACCAGCCACAGAATCTCAGAGATTTCGATAATCATGCCGGTTACGGCGGCGGTGGCGGCAGCGGAGGCGGTGAAATCATGGTGTTCAAGCCTGAACCTTTATCTTTATCTCTCTCTTCGCACAACAATAACCATGGTAGTAACAATAACAATAATAATAATAGTAACCACAACAATGGTAACAATCTTCCTTTAGAACTGAATCTTCAGCGATACGGGGCTATGATTTGCGGTGGTGGCGGTGTGATTCCGGGGTTGGTGGTTGGAGGAGGAGGAGGGAATAACAACAGTAGTGGAGGCTCTGGTTGTTCGAACGAAGTTTCTAGAAGCTGTTCGTCGGTAATAGTGCCGCAGATGATGGGTCCGTTTACGGGTTACGCTTCGGTGTTGAAGGGATCGAGGTTCTTGAAACCGGCACAGCAGTTGCTGGAGGAGTTGTGTGATGTTGGTGGTGGTGGTGTTGGTGCTGAAGATAAGATTATTGTTGCTGATGCTTCGTTAATGGAACCTACTACTTCTACTACTACGCCATTAATGGAGTGTTTGAATCATCATGAAGATCCATTGCTTGCAGATCATGGTGCTGCTGCTGTTGAGAGTCGCAAGAAGTCCAGGCTCTTGACCATGCTTGATGAGGTTTATAGGAGGTACAGACAATATTATCAGCAGATGCAGGCGGTGGTAACATCGTTCGAGTATGTTTCGGGCCTCACGAATGCAGCTCCATACGCGAGTTTGGCCATAAAGACAATGTCCAAACACTTCAGATGTTTGAAGAATGCAATTACTGACCAACTTCAGTTCAACAATAAGACTCATTTTCAACTAAGCAACAGAAAAGACGATTCTCCAAGATTTGGCAACAGCGATCGAGGCCCTTACGGCCAAAGGACAGGGTTTATTGAGCACCAACCTGTTTGGCGACCTCAAAGAGGCCTCCCTGAGCGCGCCGTGACGGTGCTCAGGGCATGGCTATTCGAGCACTTTCTGCACCCTTATCCGACTGATACGGACAAGTTAATGTTGGCTAAACAAACCGGTTTATCTCGTAGCCAGGTATCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACCCGGCAAGCTCAGAAAAATACCCAAAGGGAAGATCATAGCAGGAGCAAAACGAGTGATCACTTGCCTTCGGATAACACTCTTGCTTCCGAGAATCCGTCGACCTCTGCTGCCGATAAATTTCAGGATGCACCTTACAAGCGAGCTATGAACGAGCTTCCGAGCATGCCGATTAGGACTCAAGAACAAGTGAATCTTGCCTGTGCGGGGAATCAACAAGTTGGCATTGGAGTGAGCATGGGAAATGCTAGCAATAGTGTGTCACTTACACTAGGCCTTCACCAAAATCATGGGATTGGTTTGGCTGAACCGTTTCCATTGAGCGCGGCTCAGCGCTTTGGCCTCGGTCTCGAAACCAATAGCGAAGGCTATGTCTTGAGTGGTTTTGAAGCGCAAAATCGCCATTTCGGAAGGGATGTTATTGGAGGGCAACTATTGCATGACTTTGTAGGATGA 2058 0.4582 MAEEGFEGYHVPQQSRRDKLRVVVAHNQHQHQQQQLNLVESSSTPTTTTNNSTTTWYDPSSLLQVHHGNFLQHNNETAVKKEEQQRSSFMMGFGVVTAMNNASSSSSSPSSNSSSVSHHHHHAYMDPQSSSTLHLNNPSIHVFGNTTTTTNNNNPSFLYQPQNLRDFDNHAGYGGGGGSGGGEIMVFKPEPLSLSLSSHNNNHGSNNNNNNNSNHNNGNNLPLELNLQRYGAMICGGGGVIPGLVVGGGGGNNNSSGGSGCSNEVSRSCSSVIVPQMMGPFTGYASVLKGSRFLKPAQQLLEELCDVGGGGVGAEDKIIVADASLMEPTTSTTTPLMECLNHHEDPLLADHGAAAVESRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLTNAAPYASLAIKTMSKHFRCLKNAITDQLQFNNKTHFQLSNRKDDSPRFGNSDRGPYGQRTGFIEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNTQREDHSRSKTSDHLPSDNTLASENPSTSAADKFQDAPYKRAMNELPSMPIRTQEQVNLACAGNQQVGIGVSMGNASNSVSLTLGLHQNHGIGLAEPFPLSAAQRFGLGLETNSEGYVLSGFEAQNRHFGRDVIGGQLLHDFVG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 100 118 - -
Stsc242731g00003 685 SUPERFAMILY Homeodomain-like 467 532 IPR009057 -
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 555 573 - -
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 100 138 - -
Stsc242731g00003 685 Pfam Homeobox KN domain 482 521 IPR008422 GO:0003677|GO:0006355
Stsc242731g00003 685 Gene3D - 468 530 - -
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 535 554 - -
Stsc242731g00003 685 SMART prehox3 282 422 IPR006563 -
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 31 55 - -
Stsc242731g00003 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 549 - -
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 193 220 - -
Stsc242731g00003 685 CDD homeodomain 465 526 IPR001356 GO:0003677
Stsc242731g00003 685 FunFam BEL1-like homeodomain protein 9 468 530 - -
Stsc242731g00003 685 SMART HOX_1 465 529 IPR001356 GO:0003677
Stsc242731g00003 685 Pfam Associated with HOX 287 421 IPR006563 -
Stsc242731g00003 685 ProSiteProfiles 'Homeobox' domain profile. 462 525 IPR001356 GO:0003677
Stsc242731g00003 685 MobiDBLite consensus disorder prediction 535 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242731g00003 Stsc-Chr242731 10548 17310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242731g00003 177 685 Homeobox Transcription Factor Family AT5G02030 48.224 6.31e-121 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc242731g00003 POX 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242731g00003 - - ahf:112727818 1012.29