Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242725g00002 ATGGGTCGTGCAAGAATACCAATGGAGCTAATTCAGAAGGAGAAAGCTAGGAAGACAACATTTCTAAAGAGAAAGAATGGATTAATGAAGAAAGTGTCTGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTGTAATTATCTATGCCCCCAACTTTGATGGCGAAAACTCCGCCAAACCTGAGACATGGCCCCGAGATACCAACGAGATTCATCGAATCATTCGAAGATTCCGTGAAACAACGATTGATAGACCTGCTAGGATCTATGATGCTAAAGAGTATTACAAAGATAAGATCAAGAAACTTGAAGGTGAGATTTCAAAGGTGCAAAAGGAGAAGCTTAAGATCATGTATCCTACTTGGGATGTCTCATTCAAAGATCTAAGGGAGGATCATCTTAGAATGTTTATAAGCATTTTGGATTCTAAGATTGTTGCTTCCAATCAAAGAATCAACATGCTAAAGCAAGATTCTAAGGGAAAAGCTGCCCTAGAATCAAAAGACAATGTTTTGGATGTTGTTGAAACTCCTCATTGGGCTTCATCAAACCCTAGTAGCCAATTACCATTCTACGCTTTGCAAATAGGGCAAAGTTCATCACAATCTTCCACTCTTCCTTTTGACCAAAATGGGATGGTGGATTGGGAGCAACAAGTTGGTACTTTTAGCATTCATGACCATGGGTGGGGAAGCAATAATCAAAACTCGTCATCACCATGTTATTACAAAAGGAATACGGAATCGGTGCAGCCATATAGTTTTACTCTACCACAATGTCAGGTTTTGCCTTCGGAGTTTCAAGTTAATGGACTATATGATGCAAATATGTTCCATGATCAAG 841 0.3936 MGRARIPMELIQKEKARKTTFLKRKNGLMKKVSEFSTLCGVDVCVIIYAPNFDGENSAKPETWPRDTNEIHRIIRRFRETTIDRPARIYDAKEYYKDKIKKLEGEISKVQKEKLKIMYPTWDVSFKDLREDHLRMFISILDSKIVASNQRINMLKQDSKGKAALESKDNVLDVVETPHWASSNPSSQLPFYALQIGQSSSQSSTLPFDQNGMVDWEQQVGTFSIHDHGWGSNNQNSSSPCYYKRNTESVQPYSFTLPQCQVLPSEFQVNGLYDANMFHDQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242725g00002 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Stsc242725g00002 280 PANTHER MADS BOX PROTEIN 3 127 - -
Stsc242725g00002 280 Coils Coil 92 112 - -
Stsc242725g00002 280 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Stsc242725g00002 280 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc242725g00002 280 SUPERFAMILY SRF-like 2 99 IPR036879 GO:0003677|GO:0046983
Stsc242725g00002 280 CDD MADS_SRF_like 2 79 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc242725g00002 280 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc242725g00002 280 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc242725g00002 280 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc242725g00002 280 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242725g00002 Stsc-Chr242725 11861 16886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242725g00002 1 150 Type I MADS-box Gene Family AT5G55690 37.748 1.79e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc242725g00002 SRF-TF 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242725g00002 - - aip:107640879 375.17