Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242723g00004 ATGGCGAAAGAGGGAGTTGTTGGTTCAGTTGACTTTGACTATGCCAAGCAGATAGAGAAGGCGCGTCGTGAACTACGCGCTCTTATCTCCTCCAGGAACTGTGCTCCTCTCATGCTCCGATTAGCATGGCACGATGCTGGTACCTATGATGCAAAGACCAGAACAGGAGGTCCCAATGGTTCTATCAGGAATCAACAAGAATTGAACCACGAAGCAAACAGGGGCTTGGAAACAGCTGTTCAATTCTGTGAGGAAGTGAAGGTCAAATGTCCTAGAGTTTCATATGCAGATCTTTACCAGCTAGCTGGTGTTATTGCTGTAGAGGTAACCGGGGGTCCAACTATTCAGTTTGTTCCTGGCAGAAAGGATTCACTGGAATCTCCACCAGAAGGGCGCCTCCCAGATGCTAAACAAGGTGCAAAGCATTTAAGGGATGTGTTTTATCGCATGGGTCTCACTGATAAAGACATCGTGGTTTTATCTGGAGGCCACACATTGGGTAAAGCACATAAAGATCGCTCAGGCTTTGAAGGCCAATGGACAAAGAACCATTTCAAGTTTGATAACTCCTATTTTGTGGAGCTAATGGATTCAAAAGATTCATTCAAGCTTCCAACAGACAAGGTTCTGGTTGAGGATCCTGAGTTCCGTAAGTATGTACAACTCTACAAAAATGATGAGGATGCTTTTTTCGCAGATTACGCAGTGTCACACAAGAAGCTCTCAGAGCTGGGCTTCAATCCCAATCGTCTTTCAGACAGCCGTATTGTCCATGGAGTTATAGGCTTTCTAGTTGCCTCAACTGTGGTCGTCTTGGGTTACTTAATTGAAGTCAACAGAAAAACCAAGTGA 852 0.4507 MAKEGVVGSVDFDYAKQIEKARRELRALISSRNCAPLMLRLAWHDAGTYDAKTRTGGPNGSIRNQQELNHEANRGLETAVQFCEEVKVKCPRVSYADLYQLAGVIAVEVTGGPTIQFVPGRKDSLESPPEGRLPDAKQGAKHLRDVFYRMGLTDKDIVVLSGGHTLGKAHKDRSGFEGQWTKNHFKFDNSYFVELMDSKDSFKLPTDKVLVEDPEFRKYVQLYKNDEDAFFADYAVSHKKLSELGFNPNRLSDSRIVHGVIGFLVASTVVVLGYLIEVNRKTK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242723g00004 283 ProSitePatterns Peroxidases active site signature. 35 46 IPR019794 GO:0004601
Stsc242723g00004 283 FunFam Cytosolic ascorbate peroxidase 21 138 - -
Stsc242723g00004 283 ProSitePatterns Peroxidases proximal heme-ligand signature. 156 166 IPR019793 -
Stsc242723g00004 283 Pfam Peroxidase 22 226 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Haem peroxidase superfamily signature 35 49 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Haem peroxidase superfamily signature 156 171 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Haem peroxidase superfamily signature 111 123 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Haem peroxidase superfamily signature 93 110 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 ProSiteProfiles Plant heme peroxidase family profile. 35 283 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 13 248 IPR044831 GO:0004601|GO:0034599
Stsc242723g00004 283 Gene3D Peroxidase, domain 2 134 238 - -
Stsc242723g00004 283 Gene3D - 21 245 - -
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 67 91 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 222 246 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 53 63 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 92 110 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 172 196 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 35 50 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 150 171 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 14 34 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 132 149 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 PRINTS Plant ascorbate peroxidase signature 111 123 IPR002207 GO:0004601|GO:0006979|GO:0020037
Stsc242723g00004 283 CDD ascorbate_peroxidase 13 249 - -
Stsc242723g00004 283 SUPERFAMILY Heme-dependent peroxidases 12 259 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242723g00004 Stsc-Chr242723 17294 19098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242723g00004 39 245 Peroxidase AT4G17690 30.645 1.13e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242723g00004 K00434 - gmx:100806101 430.254