Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242723g00003 ATGCTTGAGAAAATGGGAGCCTCTGTCGTCGCTGTAGGTGATGGACAACAAGCAGTTGATGCTCTCCATTGCATGCTAGGTGTTGAAGACTGCAGAAGGGATTCTCTCCAGAAGGATAGAAACATGAGATCACAAACAGAGATTTTGACTTCTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACAGGATTGCATATTCCAATTGTTGCCCTCACAGCTCATGCAATGTCATGTGATGAAGCCAAATGCCTTGAAGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCAAATGGTGTCCACCATACTTTCACTCACCAAAAGAACAACATCATGA 402 0.4279 MLEKMGASVVAVGDGQQAVDALHCMLGVEDCRRDSLQKDRNMRSQTEILTSPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKQMVSTILSLTKRTTS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242723g00003 133 SUPERFAMILY CheY-like 1 129 IPR011006 -
Stsc242723g00003 133 PANTHER HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J 1 129 - -
Stsc242723g00003 133 SMART REC_2 7 124 IPR001789 GO:0000160
Stsc242723g00003 133 Gene3D - 1 131 - -
Stsc242723g00003 133 Pfam Response regulator receiver domain 10 124 IPR001789 GO:0000160
Stsc242723g00003 133 ProSiteProfiles Response regulatory domain profile. 1 128 IPR001789 GO:0000160
Stsc242723g00003 133 CDD REC_hyHK_CKI1_RcsC-like 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242723g00003 Stsc-Chr242723 16256 16916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242723g00003 1 129 Histidine Kinase Gene Family AT2G17820 67.647 1.53e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc242723g00003 Response_reg 6.7e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242723g00003 - - gmx:100814068 234.572