Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242722g00001 ATGGCAGCACAAGTTTCGGATGGTTGTCTTTCTAAATCCTCAAGCAACTCTGGTGGCACCTCTGAAGGGAGTGATAACACCAACAATACTAGGGACAATGATTTGGCAACTGAATCGGCAGATCAAGCCTCCAATTTCGGCCATGATTCGCGAATCTTGGACTTTGTGAAGCTCGCCAATGATGATTCATCGATTCGTTGTTTTTCCAAGGTGCAAGAGCTCGACTTTTTTAATCCGAAAAAGAGCATGATGAAAGAATCATCGTCTCCCGAAAAAAGAGAAAAAAACACCGAAGAAAATACTTCAGAGTCGAGAACTTTCTCTTGTAACTTCTGCAAGAGTAATTTCTCGTCTTCTCAAGCTTTAGGAGGGCACCAAAACGCACACAAGCAAGAGCGCGCAATAGCAAAACATCGCCAAGGGATCGGTGCAAGCCCTTTCGGTCCCCCTCACTTTCCTTATTACCTTTACCCTAGTTTCTCCACTCACCCTTTATATAATAATAGGGCACTTGGGGTAAGGATTGAGTCCATGATTAACAAACCTAATTCTTATTCTTGGCCTAACCTTAGGTTTGGTCAAACCCATAATTGGTCAATGACAGGGATGCTTGATAGGTTAAACATTGAGGGACTGAATCCCAATAGAGGAGGTTCTTCAAATTTTAATTTGAGGATAGAAGATGATAATAATGGTGGTAATAATAGAATTATTCCCCAATTAGGAGTTTCTTCTACAAATGTTGCTGCTAGTTCTAATTCAGCAATCAATGACAAGCCCACAAAGGCTGATATTCATGATCGTGATCCAACAAAGCCAGATGAACCCTCCACTACTAAGTCTCCAAGCCTTGATTTGTCACTTAAGCTTTAA 873 0.4135 MAAQVSDGCLSKSSSNSGGTSEGSDNTNNTRDNDLATESADQASNFGHDSRILDFVKLANDDSSIRCFSKVQELDFFNPKKSMMKESSSPEKREKNTEENTSESRTFSCNFCKSNFSSSQALGGHQNAHKQERAIAKHRQGIGASPFGPPHFPYYLYPSFSTHPLYNNRALGVRIESMINKPNSYSWPNLRFGQTHNWSMTGMLDRLNIEGLNPNRGGSSNFNLRIEDDNNGGNNRIIPQLGVSSTNVAASSNSAINDKPTKADIHDRDPTKPDEPSTTKSPSLDLSLKL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 248 290 - -
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 85 101 - -
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 260 275 - -
Stsc242722g00001 290 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Stsc242722g00001 290 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 290 IPR044246 GO:0009788
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 276 290 - -
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 82 104 - -
Stsc242722g00001 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Stsc242722g00001 290 Gene3D Classic Zinc Finger 80 143 - -
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 1 46 - -
Stsc242722g00001 290 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Stsc242722g00001 290 MobiDBLite consensus disorder prediction 7 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242722g00001 Stsc-Chr242722 3721 4593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242722g00001 101 290 C2H2 Transcription Factor Family AT5G10970 35.233 3.05e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242722g00001 - - adu:107474629 314.694