Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242717g00003 ATGTCTATCACTTCCTTCAAATCCCTAACCACCATGGCAGCAGAGTCATGCCTTCTCTCTCCTCCTTCCTCTCTCTTCCACTCCAAACCCATCACCTCCTCTCTCAATTCCACCTCCAAACACCACACTCTCTTCCCCAAACTCCCTCCATTCCCTTCCCTCTCTCTTTCTCTTTCTCTCTCCGCACGCCGCCATCACGTGCTCACTCACGTGGCACAAACCTCCGACTGGGCTCAGCAAGAGGAAGACAACACTCTCACCTTGGAACAAGAACAACAAGGTGAAGCTTCTCTTTCCGATTGGGAACCCACTGCTGAAATCGCAGGCGAATCTGAAGTAGTTGCTGAATCCGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGGGGATTTTGTTGAGCCACCAGAGGAAGCGAAAATCTTCGTTGGAAATTTGCCTTATGACGTTGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTATAACAGGGACACTGACCAGAGTCGCGGGTTTGGATTCGTGACGATGAGTACTGTCGAGGAAGCTGAGACTGCCGTGGAGAAGTTCCACCGCTATGATTTAGGGGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAGCGACCTGAACGTCCACCCCGTGCATTCGAACCCGCTTTTAGGATCTATGTTGGTAACTTGCCTTGGGATGTTGACAATGCTCGCCTGGAGCAGATTTTCAGCGAACACGGCAAGGTTGTGAATGCTCGCGTAGTGTACGACAGAGAGAGTGGCCGATCACGCGGCTTTGGTTTTGTCACAATGACCGACGAGAGTGAAATGAACGATGCAATTGCAGCTCTTGATGGCCAGAGTTTGGATGGAAGAGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCTTTTTGA 948 0.5011 MSITSFKSLTTMAAESCLLSPPSSLFHSKPITSSLNSTSKHHTLFPKLPPFPSLSLSLSLSARRHHVLTHVAQTSDWAQQEEDNTLTLEQEQQGEASLSDWEPTAEIAGESEVVAESEEEEEGEGEGGDFVEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAETAVEKFHRYDLGGRLLTVNKASPRGERPERPPRAFEPAFRIYVGNLPWDVDNARLEQIFSEHGKVVNARVVYDRESGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242717g00003 315 Gene3D - 70 220 IPR012677 -
Stsc242717g00003 315 CDD RRM1_PSRP2_like 138 217 - -
Stsc242717g00003 315 MobiDBLite consensus disorder prediction 112 130 - -
Stsc242717g00003 315 MobiDBLite consensus disorder prediction 76 99 - -
Stsc242717g00003 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Stsc242717g00003 315 SMART rrm1_1 232 305 IPR000504 GO:0003723
Stsc242717g00003 315 SMART rrm1_1 138 211 IPR000504 GO:0003723
Stsc242717g00003 315 MobiDBLite consensus disorder prediction 76 133 - -
Stsc242717g00003 315 SUPERFAMILY RNA-binding domain, RBD 133 225 IPR035979 GO:0003676
Stsc242717g00003 315 CDD RRM2_NsCP33_like 232 307 - -
Stsc242717g00003 315 Gene3D - 221 315 IPR012677 -
Stsc242717g00003 315 PANTHER OS02G0815200 PROTEIN 29 313 - -
Stsc242717g00003 315 FunFam 31 kDa ribonucleoprotein, chloroplastic 72 220 - -
Stsc242717g00003 315 FunFam 31 kDa ribonucleoprotein, chloroplastic 221 315 - -
Stsc242717g00003 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Stsc242717g00003 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Stsc242717g00003 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Stsc242717g00003 315 SUPERFAMILY RNA-binding domain, RBD 224 313 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242717g00003 Stsc-Chr242717 13065 15758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242717g00003 107 313 Eukaryotic Initiation Factors Gene Family AT3G16380 34.545 4.50e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242717g00003 - - ahf:112736327 456.447