Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242715g00001 ATGGGGAAAAAATCAGCTGCGGCCACCGGGGAGGAGGAGGATGTTCTGCCGGACCACCTGAGGTGCGGGAGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGATAATCTGAAGCTGTGCGAGATTCACTACCTTCAAGGTCGCAAACGGCAGTCCAAGGAGAAGGTCCCTGAGTTCCTCAAGCTTCAGAGGAAGAAGCGTAGGAGCCACTCTCCTTCTCCTCCTTCCTCTCCTGCCAACAATGTCGAAATTAGGGCACGCAAGGACTCCAAGATTGCCCTTCTCGCCAACAAGAAGCGCAAGCTTTCCGATGGTACTTCAGAGGCATTGGTCGTTCAGAAGAAGAATATGAACAAGAAGAAGAAAACCAAGAACAAGGTGTTCAGAAAAAGCGGCGATGATAATCATTTGGAGCTTATAAGGATGGTTTTAGAGAGAGAGGTTGAGAAAAGGAAGATGAGGAACAATAAGAATGATGATGATGAAGAAGATGAAGAATGCAGCGAAGGAGGAGAGTTGAGGAGAGAATTGCCTAATGGAGTGATGGCTATATCTTCCAATGGTTACAATGGCAATGTGGGTTCCCATTTTGATGTAAAAGTGGGTGCTGATTCTAATTCCAAATCGTTCGCCGTCACGCCGCGTTACTTCAGGTCCAAGAATGTTGATAGAGTCCCTGTTGGCAGGTTGCAGGTTGTGCCTTATGGACCGGGTTTGAAGAAGAAGGGAAAGGGTAAGAAGAGGTGTCATTGGTGCCAGAAGAGTAATTTTCAGAATCTTATCAAGTGTTCTAACTGTAACAAGGAGTTCTTCTGCGTGCATTGCATAAAACATCGGTATTTTGACACTCAGAATGAAGTTAAGAAGGCATGCCCTGTTTGTAGAGGAACTTGCACTTGTAAAGACTGTTTGGCAAGTCAATATAAAGACAGTGAAAGTAAGGAACATTTGGCTGGCAAAAGCAGAGTTGGTAGAATATTGCATTTACATTACCTAATCTGTATGCTCCTTCCAGTACTGAAACAAATAAGTGAATATCAGCATACTCAGCTAGAAACTGAAGCAAGACTTAAAGGGATAGAAGCTTCTGATATTCACATCAGGCAGGCTGAATTCGGCTTCAATGAGAAAAATTACTGCAATCACTGCAAAACTCCCATTTTGGATCTCCATAGAAGCTGCCCTAGTTGCTTGCATAACCTTTGCTTAAATTGTTTTCAAGAATTAAGTCAGGGAAGCATTTCTGGAGAATCAATGTTGAAGCTACCGATTAAAACAAAAACTTGCGTTGCCTGTGAGAAACAAAATTCGGATGAGAAGGCCATTTCTAGTTGCAATGTAACTCATTGTAATGGCATTGACAGTGTAACATGTCCATCTACAGAACTTGGTGGTTGTGGTAATAGCCACCGTGATTTGAGATATGTTTTTCCCTCAAGTTTGATCAAAGAGATGGAACTAAAGGCAGAAGAAATCATTCACAGTTATGAATTCCCTGAAACACCAGACCAAAGTTCAAAATGCTCATTGTGTTCTGACACAGATCACAAAACTAAAAGACATAACCAGTTGCAAGAAGCAGCTCTAAGAGAGGATTCAAATGATAATTGCTTGTTTAAGCCCACAGTTTCGGACATCAATGGTGATAATTTTGAACACTTTCAAAAACACTGGGGAAAAGGTCATCCTGTAGTGGTGCAAGATGTTCTTCAAAATACATCGAACCTCAGCTGGGATCCACTGATCATGTTCTGTAGTTATCTTGAGCGGAGCATTACAAGATACGAGAGTAATAGGGATTTGCTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATCAGGCAGTCTTTCACCGGGTCTCTCAAATGTCGTCCTCGGGAAAACACTTGCCATGAGATGCTGAAATTAAAGGGGTTGTTGTCTTCCCAACTTTTCAAAGAGCAATTTCCAGCTCATTTTTCTGAAGTACTTAATGCTCTGCCAGTTCAAGAATACATGAATCCTATGTCTGGTCTTCTGAATTTGGCTGCAAGTTTGCCACTTCAGAGTACTAAACATGACATTGGGCCATATGTACATATTTCATATGGCTGTGCCGGCAGGGAAGCTGATTCTGTGACTAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGGCACATACCACGGATGTTCCCCTCTCTACAGAGCAGCTTTCAAAAATTCGACGACTGCTGAAAAAGCATAAAGCTTTATGTCAAAGGGATTCTTCTAAAATTACTTCTGAACAACACCAGGAAGAAAAAGTAAAAGGAACGTTAAAACCACATGCTGAAGAAGTGGAACAAAAAGGTTTGCAGAGAGTGGTCAAAGAAGAAGTTGACTTTTTAAGGAGAGTCAATAGAACAGCTTACATCTCAACTCTCTCTGAAAATGCAGCTAGTGAAAGTATAGAGAACAGCTTTTCACAGAATAGAGAATGTGATTTATCTGATTCTGATTCAGAAGCCACAGTTCTTGATGGGTTTTTTACAGGCCATAATCCGAGAAATCTGTATGAAAGCTCGAAGGATAAAAGTCAGTTTTTCGCTGAGCAGTCTGGGGCCCAATGGGATGTGTTTCGCAAACAAGATGTTCCAAAGCTCATGGAATACCTTATTAGACATTGCGATGAATTTTCTCATAACTATGACAATAATAAGGAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAAAAATCACAAAACCAGACTTAAGGAAGAGTTTCAGGTTGAACCATGGACATTCAATCAACATGCTGGAGAAGCTGTTGTCATTCCCGCTGGATGTGCATACCAGATAAAAAATCCCAAGCTGATTGACGAGGTCCGACTTCTGCCGGCAGGCCATAAAGCCAAAGTAGAGAAATTGCAGGTGAAGAAAATGGTGCTTCATAGCATGAATGCAGCAATTAAGGAAATTGATGAGCTTACAAACAAGCAAACCAAAACATGA 3003 0.4182 MGKKSAAATGEEEDVLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRKRQSKEKVPEFLKLQRKKRRSHSPSPPSSPANNVEIRARKDSKIALLANKKRKLSDGTSEALVVQKKNMNKKKKTKNKVFRKSGDDNHLELIRMVLEREVEKRKMRNNKNDDDEEDEECSEGGELRRELPNGVMAISSNGYNGNVGSHFDVKVGADSNSKSFAVTPRYFRSKNVDRVPVGRLQVVPYGPGLKKKGKGKKRCHWCQKSNFQNLIKCSNCNKEFFCVHCIKHRYFDTQNEVKKACPVCRGTCTCKDCLASQYKDSESKEHLAGKSRVGRILHLHYLICMLLPVLKQISEYQHTQLETEARLKGIEASDIHIRQAEFGFNEKNYCNHCKTPILDLHRSCPSCLHNLCLNCFQELSQGSISGESMLKLPIKTKTCVACEKQNSDEKAISSCNVTHCNGIDSVTCPSTELGGCGNSHRDLRYVFPSSLIKEMELKAEEIIHSYEFPETPDQSSKCSLCSDTDHKTKRHNQLQEAALREDSNDNCLFKPTVSDINGDNFEHFQKHWGKGHPVVVQDVLQNTSNLSWDPLIMFCSYLERSITRYESNRDLLESCLDWCEVEINIRQSFTGSLKCRPRENTCHEMLKLKGLLSSQLFKEQFPAHFSEVLNALPVQEYMNPMSGLLNLAASLPLQSTKHDIGPYVHISYGCAGREADSVTKLCYDSYDVVNIMAHTTDVPLSTEQLSKIRRLLKKHKALCQRDSSKITSEQHQEEKVKGTLKPHAEEVEQKGLQRVVKEEVDFLRRVNRTAYISTLSENAASESIENSFSQNRECDLSDSDSEATVLDGFFTGHNPRNLYESSKDKSQFFAEQSGAQWDVFRKQDVPKLMEYLIRHCDEFSHNYDNNKEMVHPILDQSIFLDKNHKTRLKEEFQVEPWTFNQHAGEAVVIPAGCAYQIKNPKLIDEVRLLPAGHKAKVEKLQVKKMVLHSMNAAIKEIDELTNKQTKT 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242715g00001 1000 ProSiteProfiles JmjC domain profile. 673 978 IPR003347 -
Stsc242715g00001 1000 Pfam JmjC domain, hydroxylase 867 953 IPR003347 -
Stsc242715g00001 1000 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Stsc242715g00001 1000 MobiDBLite consensus disorder prediction 1 27 - -
Stsc242715g00001 1000 MobiDBLite consensus disorder prediction 154 175 - -
Stsc242715g00001 1000 Pfam WRC 17 58 IPR014977 -
Stsc242715g00001 1000 ProSiteProfiles Zinc finger RING-type profile. 252 298 IPR001841 -
Stsc242715g00001 1000 SUPERFAMILY Clavaminate synthase-like 552 953 - -
Stsc242715g00001 1000 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 998 IPR045109 GO:0032454|GO:0033169
Stsc242715g00001 1000 MobiDBLite consensus disorder prediction 755 774 - -
Stsc242715g00001 1000 SMART cupin_9 654 984 IPR003347 -
Stsc242715g00001 1000 MobiDBLite consensus disorder prediction 65 89 - -
Stsc242715g00001 1000 Gene3D Cupin 545 961 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242715g00001 Stsc-Chr242715 943 5763 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc242715g00001 JmjC 5.5e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242715g00001 K15601 - gmx:100787798 1195.26