Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242709g00003 ATGACAAAGTGGTTTTGTGGAATGAGAGAAATAAGAGTGGCAAAAAGGTGTAAGGAGGTTTTCTCCTTCTGTGATTTGTCCTGCTTTGTTAAGCTATTCATGGCAGCCATGGAAACACTTCTATATGCTGCATTCACTGTCATTCTAGCATTAGGAGGTTCAATAATAGGAACAATAGCAGGAGCAATGAAAGGGCAAACTACAGAAGCTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAGTTGGAGGAGCCATTGCTGCCATTGAATTGTTGAACTTTGGAGCCACTGATGACCCTTTAACCAAGGCACTGCTGAGAAGTTTATTAAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTTTCACAAGCTTATCACTTGCATATAAACACTGCAGAAACAAGTTCATCATACAGAGAAGTATCAGAAATTTATGATAACAAAGGGGTTAAAGGGATGGCAAAGAGTGTAATTCTGAAGCTTCCTTCTCTGAAATTCAAATCCAAGAAAATGTCTAACATTTCAAGCTGCTCAATTTGTTTCCAGGATTTTGAGGAAGAAGAATTGATTAGGATACTTCCAAAATGTGGGCATATTTTTCATTTACAATGTATAGATAAATGGCTAATCCAACAAGGATCATGCCCTATGTGTAGAACTCATGTTTCTAATCACATTCATGAATTGTAG 693 0.3795 MTKWFCGMREIRVAKRCKEVFSFCDLSCFVKLFMAAMETLLYAAFTVILALGGSIIGTIAGAMKGQTTEAGFLDGAGKGAVGGAIAAIELLNFGATDDPLTKALLRSLLNGKVFMEWICPAVSQAYHLHINTAETSSSYREVSEIYDNKGVKGMAKSVILKLPSLKFKSKKMSNISSCSICFQDFEEEELIRILPKCGHIFHLQCIDKWLIQQGSCPMCRTHVSNHIHEL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242709g00003 230 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Stsc242709g00003 230 CDD RING-H2_EL5-like 177 220 - -
Stsc242709g00003 230 Pfam Ring finger domain 177 220 IPR001841 -
Stsc242709g00003 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 226 IPR013083 -
Stsc242709g00003 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 28 223 IPR044523 -
Stsc242709g00003 230 SMART ring_2 178 219 IPR001841 -
Stsc242709g00003 230 SUPERFAMILY RING/U-box 162 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242709g00003 Stsc-Chr242709 16904 18923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242709g00003 5 223 C3H Transcription Factor Family AT5G66070 34.934 4.47e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242709g00003 - K19041 gmx:100305612 254.218