Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242706g00002 ATGGAACATCATCAACACTCCTCATCTTTAATCTCTTCCTTATCCCTCTTTTTATTTTCATTACTAAGCTTCATCCTTTTCATATCACAACTTCTCAAATTTTTAGCCAAGAAATCCAAAGCCCTAACCAAGAAAACAACACCAAACCTTCCCCCCGGACCATGGACACTACCTATAATCGGTAGCATACACCACTTCTTTGGAAAATCTCCACCCCACCATCGCTTGAGAGACTTAGCACACAAATATGGTCCTCTCATGCACCTTAAGCTCGGCGAAGCATCAATTATGGTGGTTTCTTCTCCCGAAGTTGCCAAAGAAGTGTTTAAAACCTACGACACCATTTTCGCCGAAAGGCCTAAGCAGTTAATTGGCGCAGATATATTGTGCTATGGCTCCACGGACATAGCCATGGCGCGATACGGCGGGTATTGGAAGCAACTAAGGAGAATATCTTCAGTGGAACTTCTTGGCCCTAAGCGTGTCCGTTCATTCAAATCAATAAGGGAAGAAGAGGTAATGAATTTGATAGTATGGATTTCAGCTAACAATGGATCTTGTGTTAATCTTAGTAAGAAAGTTGCTTCCATGACAAGTGCAATCACTGCTAGGGCAACTTTTGGGGAAAAGTGCAAGGATGAAGAAGAGTTCATTTTGTTGTTGAAAAATCTTGGAAAAATTGCTGAACGTTTATTTGTTGTGTTTAGTCTTTTTCCATCTCACACATGGCTTCATCTCATAAGTAGAACTCAGTATGAAGCAGAAAAATTGCATAAAGAATTTGATATGATTGTTGAAAACATCATTGGAGAAAAACTAAAAAAGAAGAGGAATAGTGGTGGTGATGAATCTAATAAGGTAGAGGATCTTCTTTCTATTCTACTAAATCTTGTTGAAGATCATGGCGCCCTTGAGTATCCCTTGACAATGGACAACGTCAAAGCTATTGTTTTTGATATGTTTGTTGCCGGAGTTGAAACATCATCTACAGTCATAAAATGGGCGATTTCGGAGCTAGTGAAGAACCCTAAAGCAATGGCAAGAGCTCAAGAAGAAGTTAGAAAAGCTTTTGGCATCAATGGATACACCAAAGAATCATCATCATCTCTTGAGAAACTAACATATTTAAGAGCGGTTATCAAAGAGACCCTAAGATTACACCCTCCATTTCCTATACTCCTTCCAAGAGAATGTAGAGAGACATGTGAGATCAATGGATACACCATAGCCGCAGGAAGCAAAGTGATAGTGAATGCATGGGCAATCGGAAGAGATCCAAAGTATTGGGGCGGCGGAGAAGACGCTAAGAGTTTCCGGCCGGAAAGGTTTCTAGAATGTTCCATTGATTACAAAGGTTCCAATTTTGAGTTCATACCTTTTGGTGCTGGGAGAAGGATATGTCCAGGCTTGTATTTTGCTGTTTCCAGCATTGAACTTTGTGTTGCTCATCTTCTTTATTATTTCAATTGGCAAGTTCCGAATGATGGAGAGATGGATATGACTGAAGATTTGGGAAGCACAGCAAGAAGGAAGAATGATCTTATCTTAGTTCCAATGACTTGGAATGATAGTAAGAAATTTTAA 1584 0.3977 MEHHQHSSSLISSLSLFLFSLLSFILFISQLLKFLAKKSKALTKKTTPNLPPGPWTLPIIGSIHHFFGKSPPHHRLRDLAHKYGPLMHLKLGEASIMVVSSPEVAKEVFKTYDTIFAERPKQLIGADILCYGSTDIAMARYGGYWKQLRRISSVELLGPKRVRSFKSIREEEVMNLIVWISANNGSCVNLSKKVASMTSAITARATFGEKCKDEEEFILLLKNLGKIAERLFVVFSLFPSHTWLHLISRTQYEAEKLHKEFDMIVENIIGEKLKKKRNSGGDESNKVEDLLSILLNLVEDHGALEYPLTMDNVKAIVFDMFVAGVETSSTVIKWAISELVKNPKAMARAQEEVRKAFGINGYTKESSSSLEKLTYLRAVIKETLRLHPPFPILLPRECRETCEINGYTIAAGSKVIVNAWAIGRDPKYWGGGEDAKSFRPERFLECSIDYKGSNFEFIPFGAGRRICPGLYFAVSSIELCVAHLLYYFNWQVPNDGEMDMTEDLGSTARRKNDLILVPMTWNDSKKF 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242706g00002 527 Gene3D Cytochrome P450 42 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 Pfam Cytochrome P450 51 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 CDD CYP71-like 82 514 - -
Stsc242706g00002 527 PANTHER CYTOCHROME P450 71B11-RELATED 27 519 - -
Stsc242706g00002 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Stsc242706g00002 527 FunFam Cytochrome P450 99A2 40 519 - -
Stsc242706g00002 527 PRINTS E-class P450 group I signature 104 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242706g00002 527 SUPERFAMILY Cytochrome P450 51 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242706g00002 Stsc-Chr242706 9086 11129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242706g00002 40 518 Cytochrome P450 AT4G13290 39.148 7.39e-113 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242706g00002 - K23807 gmx:100779851 623.239