Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242705g00003 ATGATGGATGATGGCCACGAACATGGAAACGGTAGGCATACAATGGACTACTACAGAGGAGCAAATTCCCCGTGGAGTATGGCTTCCCATCATCATGTAAAGGAACCAAATGCACTAGTTTTGAATAAGAAAATTAGGTCCATTATGGCCGAAAGGCGTGTAATTCTAGAATTGGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTAGAGATGAGGCCCTGCGTCAGAGGGATGAAGCAATTGCTCAGAGGGATAGTGCCCTAAGGGAACGCGATAATGCCCTTGCTGCCCTTCAAAATCGGGAAGATGCTATCAACTTCTCATTAGGCAATGGAGTTCAACGTGGTTCAAAACGAATGCACCATCCTGCTAACTATCTAGGTAACATGACAGATTCCACATACAACACAAAGGATGTGCCGATAACCGATGCCTTCCCAGTTACAATCATACCCTCTGATTCTATCAAATCGCATCGGGCTAAGAAAACTAAGGACAACAAGACAATTTCTGCTAAGGCATCAAAGTCCCCTAGTAAAGGAAAGAAAATGGGCGAGGATTTAAATAGACGGGCGTCTTCCGAGGGGACGAAGTACAAATCAGAATGGGATAGACAAGATGTCGGCTTGAATTTGGTTACCTTCGACGAAACTTACATGCCTGTCCCGGTTTGTACATGCACCGGAGTACCGCGGCAGTGCTACAAATGGGGTAATGGTGGATGGCAGTCATCTTGTTGTACGACCACCTTGTCAATATATCCGCTACCGCAGCTTCCTAACAAGCGCCATGCACGTATCGGAGGGCGAAAGATGAGCGGTAGCGTCTTTACAAGACTACTAAGTAGGTTTGCAGCACAAGGACATGATTTATCTGTACCATTGGATCTTAAGGACTACTGGGCAAGACATGGAACAAATCGGTACATTACAATCAAGTAG 948 0.4568 MMDDGHEHGNGRHTMDYYRGANSPWSMASHHHVKEPNALVLNKKIRSIMAERRVILELEAAISEKNEALAARDEALRQRDEAIAQRDSALRERDNALAALQNREDAINFSLGNGVQRGSKRMHHPANYLGNMTDSTYNTKDVPITDAFPVTIIPSDSIKSHRAKKTKDNKTISAKASKSPSKGKKMGEDLNRRASSEGTKYKSEWDRQDVGLNLVTFDETYMPVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSIYPLPQLPNKRHARIGGRKMSGSVFTRLLSRFAAQGHDLSVPLDLKDYWARHGTNRYITIK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242705g00003 315 PANTHER - 2 315 IPR010409 -
Stsc242705g00003 315 Pfam GAGA binding protein-like family 2 315 IPR010409 -
Stsc242705g00003 315 MobiDBLite consensus disorder prediction 159 202 - -
Stsc242705g00003 315 MobiDBLite consensus disorder prediction 181 202 - -
Stsc242705g00003 315 Coils Coil 58 92 - -
Stsc242705g00003 315 SMART GAGA_bind_2 2 315 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242705g00003 Stsc-Chr242705 9964 13461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242705g00003 2 315 BBR or BPC Transcription factor family AT2G21240 55.836 3.02e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Stsc242705g00003 GAGA_bind 6e-96 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242705g00003 - - jre:108986984 503.827