Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242702g00001 ATGGGTAGAAAAGCCTCTAGCTCTTCATCTTCCTCTTCATCTTTCAACCCTTCTTTTTCAACTGCTTCTTCACACCTTCATGCTGATCTTAGTCTTGGACTCAGCATTTCTTCCACTCATCAACATCTTCCATCTTCTATCTCAAGGGGGCAGTGGCAAATCCAATCATCATCATCATCACTAGCAAGTAGTTCACAACAATTAGGAGGTGAAGGAAATGATTGCAGTGACCATAACACCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGCAGAAAACTCAACCTTTTAGCTCATGATGGCTACCATCAGTTGGTTAAGGCTCTTGAACAAATGTTTGACACCACCATACTCTGGGGAACTGAGTTAGATGCAGTGCAAGGAGAGAGGTGCCATGTGCTAACTTATGAGGATGGAGAAGGAGACTTGATTATGGTTGGTGATGTGCCTTGGGAAATGTTTTTATCAGCCGTAAAGAGATTGAAGATCACCAGAGTTGACACATTTGGCTATTGA 522 0.4234 MGRKASSSSSSSSSFNPSFSTASSHLHADLSLGLSISSTHQHLPSSISRGQWQIQSSSSSLASSSQQLGGEGNDCSDHNTFFVKVYMEGIPIGRKLNLLAHDGYHQLVKALEQMFDTTILWGTELDAVQGERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVDTFGY 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242702g00001 173 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 168 IPR003311 GO:0005634|GO:0006355
Stsc242702g00001 173 Pfam AUX/IAA family 72 167 IPR033389 -
Stsc242702g00001 173 Gene3D - 74 172 - -
Stsc242702g00001 173 ProSiteProfiles PB1 domain profile. 80 170 IPR000270 GO:0005515
Stsc242702g00001 173 SUPERFAMILY CAD & PB1 domains 76 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242702g00001 Stsc-Chr242702 2090 3802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242702g00001 84 165 B3 DNA Binding Superfamily AT4G23980 39.024 4.09e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc242702g00001 AUX_IAA 5.4e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242702g00001 K14484 - gmx:100781660 213.001