Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242699g00001 ATGGCTTTCAAGCTGTTGGTGCTTGTTTTCTACAAATGTGGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACATGTTGCTGTTGTATCGTGCCTTGCTGCCAACACCAGTTTGGTACCGTTTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCATCACTGACCACAGGATTGTATTTAACATACAAACTAACAACTTTAGTTGAGAAGGTACAAAACTTCTTTTCTGCCTTAAGACTATTATCTGGAAGGAAAGTCCATTATGGGGATTATGCTACAACGGAACAGGTAAATTCTGCTGGTGACCTTTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAGGAATGTGTATCCGAATGGCTTGAGCGTGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTATGCCAGTTGTTTTAA 519 0.4277 MAFKLLVLVFYKCGRGPSFRRQGQILTAVEYMLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTYKLTTLVEKVQNFFSALRLLSGRKVHYGDYATTEQVNSAGDLCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242699g00001 172 SMART ring_2 111 148 IPR001841 -
Stsc242699g00001 172 CDD RING-HC_RNFT1-like 109 149 - -
Stsc242699g00001 172 ProSiteProfiles Zinc finger RING-type profile. 111 149 IPR001841 -
Stsc242699g00001 172 SUPERFAMILY RING/U-box 110 154 - -
Stsc242699g00001 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 158 IPR013083 -
Stsc242699g00001 172 Pfam Zinc finger, C3HC4 type (RING finger) 109 154 - -
Stsc242699g00001 172 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Stsc242699g00001 172 Coils Coil 170 172 - -
Stsc242699g00001 172 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 172 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242699g00001 Stsc-Chr242699 469 1748 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242699g00001 1 172 C3H Transcription Factor Family AT5G01960 73.256 7.43e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242699g00001 K22379 - cit:102625756 261.151