Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242678g00001 ATGTTCTCTTCCACATATGATTCAAACCCTTTCCCTAACTTCCCTTCATCATCTTCTTCTTCATCTTACCCTAATAATAATAATAAACTCCCTTTCTACATTGATCCTCACCACAACAATGATTTTGCAACCACACTCTTCCACCATCATCATGATCCATCATCATTACTTGTTTCTCCTTTCATACCTTCAAGTGAGGTTCCATTCCCATCATCAGCGGAAGAAGCTGTTGCTGTTGCAGCAATGCTTGATCAAGATGCTGCAGCAAGCAATGGCTGCTGCTACGGCGGCGCCGGAGGACTAATCTACGGTGGTGGTGGTGTTGGGGGTGGTGTTCCCAATTTCCTGAGTCAAAAAGCGTTAGGAAGCAGCATAGGGACGAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGAGACAGAAGAGTGAGGCTTTCAAGCGAAATAGCGCGCAAGTTCTTTGATCTTCAGGACATGCTGGAGTTCGACAAGCCCAGCAACACTCTGGAATGGCTCTTCACCAAGTCTGAGAATGCAATCAAGGAGCTAGCGAGGAGCAAACACAGCTGCAGCGGGGAGAAATGCTCCTGTTGTGAATGTGATCAAGCAGGTGGTGGTGGGGTGGTGGTGTTTGAGAAATCATCCATGGCGGGAAGCAGTGATTCTTGTTCGAAAGGGAGGAACAAGTTGAAGTGGACACAGAGGGAAGATGTTTGTGTTCAGACAAAGAAGGAGTCAAGGGATAAAGCAAGGGCGAGAGCAAGAGAAAGAACTTGTTACAAGATGAACAGCAACAACAATGGAAGAGTAGTAACGGTGCAAGATTTGGAGGACAAAACCCCTGCTGCAGCACTTGAACAATTTGAGCATTCTTCTTGTGCTGGAAGATGGCCTAATCAGATGCTTCAACAGCAACAACAACCTTACTATAACCCTCATGCTTTTATTAACAATGTCATTGATGAATCTATCATCATTAAAAGGAACATGAATCGTGACCAAAACCTTATTGCAATCCCTAATAACAACATTATTGTTGATGATGATGAGTACCAAAACCACTCATCACCGTTCCTCTATTCAACTCCAAATTGGGACACCAACAACGAAACAATTAATGGTTGCTCCAACTTTTGTGCAATGGCAGCCACCATGAATAATCTATCAACATGCTTCACGGACCAGTAG 1197 0.4436 MFSSTYDSNPFPNFPSSSSSSSYPNNNNKLPFYIDPHHNNDFATTLFHHHHDPSSLLVSPFIPSSEVPFPSSAEEAVAVAAMLDQDAAASNGCCYGGAGGLIYGGGGVGGGVPNFLSQKALGSSIGTKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSCSGEKCSCCECDQAGGGGVVVFEKSSMAGSSDSCSKGRNKLKWTQREDVCVQTKKESRDKARARARERTCYKMNSNNNGRVVTVQDLEDKTPAAALEQFEHSSCAGRWPNQMLQQQQQPYYNPHAFINNVIDESIIIKRNMNRDQNLIAIPNNNIIVDDDEYQNHSSPFLYSTPNWDTNNETINGCSNFCAMAATMNNLSTCFTDQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242678g00001 398 ProSiteProfiles TCP domain profile. 128 186 IPR017887 -
Stsc242678g00001 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 127 306 IPR005333 GO:0003700
Stsc242678g00001 398 ProSiteProfiles R domain profile. 247 264 IPR017888 -
Stsc242678g00001 398 MobiDBLite consensus disorder prediction 1 23 - -
Stsc242678g00001 398 Pfam TCP family transcription factor 127 267 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242678g00001 Stsc-Chr242678 18411 19607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242678g00001 127 269 TCP Transcription Factor Family AT1G67260 41.772 1.32e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc242678g00001 TCP 7.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242678g00001 - - adu:110275773 462.611