Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242674g00001 ATGAACACTGCTACCAGTACAACGGCAGTTACAAGAAAGGATATGGATCGGATCAAGGGCCCCTGGAGCCCCGAAGAAGACGAGGCCCTCCAGAAGCTCGTGGAGAAGCACGGGCCCAGGAACTGGTCACTCATAAGCAAATCCATCCCGGGCCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAACCAGCTCTCACCACAGGTGGAGCATCGGGCTTTCACACCCGAAGAGGACGACACCATAATCAGAGCCCACGCTCGTTTCGGTAACAAGTGGGCCACCATAGCCCGACTCCTCAACGGCAGAACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCTTCCATGGGCCCAATCGACGACCCTCACTTCGTTCAACCACTCAAACGATCCGTCAGCGCCGGTGCCGCCGTTCCCGTATCAACTGGCCTCTACATGAACCCTCCCACGCCCGGAAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTCCCCGTAGCCTCCACATCTCACGTTTTCCGACCTGTGCCTAGGACCGGCGCTGTTGTGCCGCCGGTAGAAACGACGTCATCTTCCTATGACCCTCCAACTTCGTTGTCCCTTTCCCTCCCCGGCGTCGATTCCAATTCGGAATCCTCCAATCGCGGGAACGATTCGTCGCCTCAGGCGGCGCCGCCGTTGACTGCCATACCTCTGTTGCCTATAATGTCGGCTGCGGTTTCTGCGACGGTGGCGGCTGTTCCTACCGTAACAGCTGCAGCTACTGCTCCGTTGGCTGCACAGCCGTTACAGCAAATTCGCGATCCATCGGCTGTGGCTGGTGTTCCGAAGCAGAATAACGGAGCGGTTCCATTCAACTTCAGTGCTGAGCTTTTGGCGGTGATGCAAGATATGATAAGAAAGGAGGTGAGGAGTTACATGGCTGGATTAGAGCAGCAGAGTAACAATAATGGGATGTGTTTTCAGGCTGCTGATGATGGCTTTAGGAACGCTTCCGTTAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 1053 0.5641 MNTATSTTAVTRKDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCASMGPIDDPHFVQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPVASTSHVFRPVPRTGAVVPPVETTSSSYDPPTSLSLSLPGVDSNSESSNRGNDSSPQAAPPLTAIPLLPIMSAAVSATVAAVPTVTAAATAPLAAQPLQQIRDPSAVAGVPKQNNGAVPFNFSAELLAVMQDMIRKEVRSYMAGLEQQSNNNGMCFQAADDGFRNASVKRIGISRIDS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242674g00001 350 FunFam MYB transcription factor 19 70 - -
Stsc242674g00001 350 CDD SANT 73 116 IPR001005 -
Stsc242674g00001 350 MobiDBLite consensus disorder prediction 153 176 - -
Stsc242674g00001 350 SMART sant 70 118 IPR001005 -
Stsc242674g00001 350 SMART sant 18 67 IPR001005 -
Stsc242674g00001 350 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Stsc242674g00001 350 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Stsc242674g00001 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Stsc242674g00001 350 Gene3D - 72 131 - -
Stsc242674g00001 350 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Stsc242674g00001 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Stsc242674g00001 350 MobiDBLite consensus disorder prediction 191 231 - -
Stsc242674g00001 350 PANTHER MYB PROTEIN-RELATED 19 217 - -
Stsc242674g00001 350 CDD SANT 21 63 IPR001005 -
Stsc242674g00001 350 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc242674g00001 350 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Stsc242674g00001 350 MobiDBLite consensus disorder prediction 1 23 - -
Stsc242674g00001 350 Gene3D - 18 70 - -
Stsc242674g00001 350 MobiDBLite consensus disorder prediction 150 232 - -
Stsc242674g00001 350 FunFam Transcription factor MYB44 73 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242674g00001 Stsc-Chr242674 5338 6390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242674g00001 11 349 MYB Transcription Factor Family AT4G37260 48.753 2.26e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242674g00001 Myb_DNA-binding 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242674g00001 K09422 - qsa:O6P43_024595 446.047