Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242668g00005 ATGGGAAGTAAGTATGATTTCATGGCAGAAGATGTGACCTTCTGTGGTGTGTTTGATGGCCATGGTCCTCATGGTCACCTTGTTGCACGCAAAGTTAGGGACTCCCTGCCAATAAAGCTGCTTTCTTTTTTGCATTCCGAAGAATCGAGGCGAAACGGATTGGGGAAAGCTTTTTTAAAAGGGAATATAAAGCCTGACGCTGAAGATCCTGAGAAAGATTGCTCTGATGAGGATAAACTAAATTCAATGTGGAGAGAAGCTTTTATGAAGGCATATAAGGCCATGGACAAAGAGCTGAGGTCTCATCTGAATCTGGATTGTTTCTGTAGCGGGAGCACGGCTGTAACAATAGTGAAGCAGGGATCAAATCTGTTCATGGGAAACATTGGGGATTCCCGAGCCATCATGGGATCTAAGGACAGCGATGGCTCCATGGTGGCGACTCAGTTGACAGTTGATTTGAAACCTGATTTGCCAAGGGAAGCGGAAAGAATCAAAAGGTGCAAGGGCAGGGTGTTTGCCTTGCAAGATGAACCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGTTTGAAGGAATACGGTGTTATTTCTATACCAGAGTTTTCTCATCGGCTTCTTACAGACAAAGATGAGTTCATTGTTCTTGCCTCAGATGGGGTCTGGGATGTGTTAAGCAATGAAGAGGTGGTTGAGATAGTATCCACGGCACCAACTCGAGCATCAGCAGCAAGGATTCTGGTGGATTCTGCGGCCCGAGAGTGGAAACTCAAGTATCCTACATCAAAGATGGATGATTGTGCTGTTGTATGCCTTTTTTTGGATGGTAAAATGGACGCAGAATCCGATTGTGATGAGCAGTGCTATTCTTCTGCGACAATCCAAAGCAACCATTCGGGTAATCCAGTCGAGTCGGATGATGGTCAAAAGGCCGAGCCTTCTCTGCAAAGGAACTTCACTGTACGATCCTCAGAAGAAAATCAAACCTATGGAGGAATATCTGTTGATGTTGAGGATGGAACTTCAGTAGCAGCAGCAGCAACTGAAGATCAAAATTGGTTGGGTTTGGAAGGTGTCACCCGAGTAAACTCATTGGTCCAACTTCCTAGATTTTCTGAGGAAAAGCAAAAGCAAGCCTCTTAG 1185 0.4506 MGSKYDFMAEDVTFCGVFDGHGPHGHLVARKVRDSLPIKLLSFLHSEESRRNGLGKAFLKGNIKPDAEDPEKDCSDEDKLNSMWREAFMKAYKAMDKELRSHLNLDCFCSGSTAVTIVKQGSNLFMGNIGDSRAIMGSKDSDGSMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDEFIVLASDGVWDVLSNEEVVEIVSTAPTRASAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDAESDCDEQCYSSATIQSNHSGNPVESDDGQKAEPSLQRNFTVRSSEENQTYGGISVDVEDGTSVAAAATEDQNWLGLEGVTRVNSLVQLPRFSEEKQKQAS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242668g00005 394 SUPERFAMILY PP2C-like 9 290 IPR036457 -
Stsc242668g00005 394 CDD PP2Cc 1 288 IPR001932 -
Stsc242668g00005 394 PANTHER PROTEIN PHOSPHATASE 5 286 IPR015655 GO:0004722|GO:0006470
Stsc242668g00005 394 Pfam Protein phosphatase 2C 13 258 IPR001932 -
Stsc242668g00005 394 SMART PP2C_4 1 286 IPR001932 -
Stsc242668g00005 394 MobiDBLite consensus disorder prediction 307 328 - -
Stsc242668g00005 394 Gene3D - 4 301 IPR036457 -
Stsc242668g00005 394 ProSiteProfiles PPM-type phosphatase domain profile. 1 288 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242668g00005 Stsc-Chr242668 6618 10977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242668g00005 6 391 PP2C-type Phosphatase Gene Family AT1G03590 71.611 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242668g00005 - - gmx:100813306 669.077