Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242668g00004 ATGGGGTGTTGTGTCTCAACAAGCAGTAAGAGTAGTTGTAGTAGTAAGAGCAATGGAGACTCAGACTCTCCATCTTGTCTAGAAATCAGTTTATGTGGTCAGAAGAAAGCAAGGAGAACATTCTCCAATCATGTTGTTTCTCTCCATCAGTTATCTTCCTTACCAAACAGGATTTTCGCCAACGGAAAGAGCCGGTCTTCTTGCATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAGGATGCCATGATTGTATGGGAAGATTTCATGGCAGAAGATGTGACCTTCTGTGGTGTGTTTGATGGCCATGGTCCTCATGGTCACCTTGTTGCACGCAAAGTTAGGGACTCCCTGCCAATAAAGCTGCTTTCTTTTTTGCATTCCGAAGAATCGAGGCGAAACGGATTGGGGAAAGCTTTTTTAAAAGGGAATATAAAGCCTGACGCTGAAGATCCTGAGAAAGATTGCTCTGATGAGGATAAACTAAATTCAATGTGGAGAGAAGCTTTTATGAAGGCATATAAGGCCATGGACAAAGAGCTGAGGTCTCATCTGAATCTGGATTGTTTCTGTAGCGGGAGCACGGCTGTAACAATAGTGAAGCAGGGATCAAATCTGTTCATGGGAAACATTGGGGATTCCCGAGCCATCATGGGATCTAAGGACAGCGATGGCTCCATGGTGGCGACTCAGTTGACAGTTGATTTGAAACCTGATTTGCCAAGGGAAGCGGAAAGAATCAAAAGGTGCAAGGGCAGGGTGTTTGCCTTGCAAGATGAACCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCAATGGCTAGAGCATTTGGCGATTTTTGTTTGAAGGAATACGGTGTTATTTCTATACCAGAGTTTTCTCATCGGCTTCTTACAGACAAAGATGAGTTCATTGTTCTTGCCTCAGATGGGGTCTGGGATGTGTTAAGCAATGAAGAGGTGGTTGAGATAGTATCCACGGCACCAACTCGAGCATCAGCAGCAAGGATTCTGGTGGATTCTGCGGCCCGAGAGTGGAAACTCAAGTATCCTACATCAAAGATGGATGATTGTGCTGTTGTATGCCTTTTTTTGGATGGTAAAATGGACGCAGAATCCGATTGTGATGAGCAGTGCTATTCTTCTGCGACAATCCAAAGCAACCATTCGGGTAATCCAGTCGAGTCGGATGATGGTCAAAAGGCCGAGCCTTCTCTGCAAAGGAACTTCACTGTACGATCCTCAGAAGAAAATCAAACCTATGGAGGAATATCTGTTGATGTTGAGGATGGAACTTCAGTAGCAGCAGCAGCAACTGAAGATCAAAATTGGTTGGGTTTGGAAGGTGTCACCCGAGTAAACTCATTGGTCCAACTTCCTAGATTTTCTGAGGAAAAGCAAAAGCAAGCCTCTTAG 1431 0.4479 MGCCVSTSSKSSCSSKSNGDSDSPSCLEISLCGQKKARRTFSNHVVSLHQLSSLPNRIFANGKSRSSCIFTQQGRKGVNQDAMIVWEDFMAEDVTFCGVFDGHGPHGHLVARKVRDSLPIKLLSFLHSEESRRNGLGKAFLKGNIKPDAEDPEKDCSDEDKLNSMWREAFMKAYKAMDKELRSHLNLDCFCSGSTAVTIVKQGSNLFMGNIGDSRAIMGSKDSDGSMVATQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDEFIVLASDGVWDVLSNEEVVEIVSTAPTRASAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDAESDCDEQCYSSATIQSNHSGNPVESDDGQKAEPSLQRNFTVRSSEENQTYGGISVDVEDGTSVAAAATEDQNWLGLEGVTRVNSLVQLPRFSEEKQKQAS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242668g00004 476 CDD PP2Cc 65 370 IPR001932 -
Stsc242668g00004 476 MobiDBLite consensus disorder prediction 389 410 - -
Stsc242668g00004 476 FunFam probable protein phosphatase 2C 52 57 373 - -
Stsc242668g00004 476 Gene3D - 57 372 IPR036457 -
Stsc242668g00004 476 Pfam Protein phosphatase 2C 92 335 IPR001932 -
Stsc242668g00004 476 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Stsc242668g00004 476 SMART PP2C_4 55 368 IPR001932 -
Stsc242668g00004 476 MobiDBLite consensus disorder prediction 1 25 - -
Stsc242668g00004 476 PANTHER PROTEIN PHOSPHATASE 37 368 IPR015655 GO:0004722|GO:0006470
Stsc242668g00004 476 SUPERFAMILY PP2C-like 61 372 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242668g00004 Stsc-Chr242668 6616 10977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242668g00004 1 473 PP2C-type Phosphatase Gene Family AT1G03590 69.247 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242668g00004 - - gmx:100813306 793.112