Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242667g00004 ATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGACGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGTACAGGTGACGGTGTTTTGGGTGGTGGGACTCATCGTGTTGGGAGTTCTTTGGGTGTAAAAATGGACTCTCTTTTTCCAAAAGCCTTGGAATCTGCAGTGGTTCTTGATGTACAGAATATAGCCTGTGGTGGACGACATGCAGCCTTAGTGACGAAACAAGGTGAAATTTTCTCTTGGGGTGAAGAATCAGGAGGTAGGCTTGGGCATGGTGTTGACTCTGATGTTCCCCATCCAAAGCTTATTGAAACTTTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACATACAATTATGGTCTTCTGGGGCATGGTAATCAAGTAAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCCCTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCGTGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTGTTTACCTTTGGTGATGGTACATTTGGTGTTTTGGGTCATGGAGACCGTAAAAGTGTTTCATTACCTAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAACTGTTCACCTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCAGCCCTGGTTGATCCCAATTTCTGTCAGGTTGCTTNNNNNNNNNNAATGGGTAGTCCTGTCTATGGTCAGTTGGGAAATCCTCAAGCTGACGGGAAGCTACCAAGCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATTGCTTGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACAGAAGTATACACATGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATTCAGATGACAGAAATGTCCCAGCATTAGTAGAAGCTTTGAAAGACAAACAGGTCAAAAGTGTTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACAATTGTTATAATTGTGGACTTGTTTTCTGTCATTCTTGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGACAATTGTTTTAATAAACTAAGGAAATCCATGGAAACTGATTCTTCATCACATTCTTCTGTGAGCAGAAGAGGCAGTATCGTTCCTGGGTCACTTGACTTAATTGATAAGGATGATAAGCTGGATTCAAGATCTCGTGGTCAACTGGCTAGGTTTTCTTCAATGGAGTCCTTTAAGCAAGTAGAAAGCAGATCTTCTAAGAAAAACAAGAAGTTGGAATTCAACAGTAGTCGCGTCTCTCCTGTCCCAAATGGGGGTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCGTCGAAGAAGTTCTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCTCCAATATCTAGACGGCCTAGTCCACCACGTTCAACTACTCCAACTCCAACACTGGGAGGTCTTACTTCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGACAGCAGGTGGAAAACCTGACTCGGAAAGCGCAACTTCAAGAAGTTGAGTTGGAAAGGACAACTAAACAGCTAAAGGATGCTATAGCAATTGCTGGAGAGGAAACTGCAAAGTGCAAAGCAGCAAAGGAAGTGATCAAATCTCTTACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCTGCTAGGAATGTCAAATCTCCTTCTCTTTCTTCCTTTGGTTCCAATGAACTTAGCTATGCTTCCATTGATCGATTGAATATTCAAGCAACAAGCCCAGAAGCAGACTTAACTGGATCAAATAATCAGTTGCTTTCAAATGGATCCAGCACTGCCAGTATCCGTAGTAGTGCTGGTCACAATAAACAGAACCAGTCAGAGGTAACTAACAAAAATGGGAGCAGAACAAAGGACAGTGAATCCCGTAGTGAGAATGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCTGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGAAAGCGGTTCAGCGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGTGCAAGAGTATATGAGCAATACAATGTTCGCATGATAGACAAGTCCAGCGTCGGTGTTGGGAGTGAAGATCTGGCTCACTGA 2580 0.4329 MHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSSLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIETLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVDPNFCQVAXXXXMGSPVYGQLGNPQADGKLPSRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDSDDRNVPALVEALKDKQVKSVACGTNFTAAICLHKWVSGVDQSXXXXXXXXXXXXXHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKSMETDSSSHSSVSRRGSIVPGSLDLIDKDDKLDSRSRGQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRQQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLSSFGSNELSYASIDRLNIQATSPEADLTGSNNQLLSNGSSTASIRSSAGHNKQNQSEVTNKNGSRTKDSESRSENEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242667g00004 859 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 85 95 IPR000408 -
Stsc242667g00004 859 ProSiteProfiles BRX domain profile. 786 841 IPR013591 -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 37 98 IPR000408 -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 774 790 - -
Stsc242667g00004 859 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 392 477 IPR017455 -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 589 619 - -
Stsc242667g00004 859 SUPERFAMILY RCC1/BLIP-II 36 414 IPR009091 -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 99 150 IPR000408 -
Stsc242667g00004 859 FunFam PH, RCC1 and FYVE domains-containing protein 1 8 259 - -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 360 IPR000408 -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 538 559 - -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 544 559 - -
Stsc242667g00004 859 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 484 IPR013083 -
Stsc242667g00004 859 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 244 254 IPR000408 -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 257 IPR000408 -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 735 773 - -
Stsc242667g00004 859 Pfam Unstructured region between BRX_N and BRX domain 712 779 - -
Stsc242667g00004 859 Pfam Transcription factor regulating root and shoot growth via Pin3 785 840 IPR013591 -
Stsc242667g00004 859 Coils Coil 621 662 - -
Stsc242667g00004 859 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 82 95 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 356 377 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 151 167 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 208 222 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 101 117 IPR000408 -
Stsc242667g00004 859 PRINTS Chromosome condensation regulator RCC1 signature 192 208 IPR000408 -
Stsc242667g00004 859 Gene3D - 312 421 IPR009091 -
Stsc242667g00004 859 Gene3D - 161 311 IPR009091 -
Stsc242667g00004 859 Gene3D - 15 160 IPR009091 -
Stsc242667g00004 859 Coils Coil 677 697 - -
Stsc242667g00004 859 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 18 692 - -
Stsc242667g00004 859 Pfam Regulator of chromosome condensation (RCC1) repeat 150 202 IPR000408 -
Stsc242667g00004 859 Pfam Regulator of chromosome condensation (RCC1) repeat 99 147 IPR000408 -
Stsc242667g00004 859 Pfam Regulator of chromosome condensation (RCC1) repeat 269 309 IPR000408 -
Stsc242667g00004 859 Pfam Regulator of chromosome condensation (RCC1) repeat 362 409 IPR000408 -
Stsc242667g00004 859 Pfam Regulator of chromosome condensation (RCC1) repeat 206 254 IPR000408 -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 151 205 IPR000408 -
Stsc242667g00004 859 SUPERFAMILY FYVE/PHD zinc finger 433 482 IPR011011 -
Stsc242667g00004 859 SMART fyve_4 385 478 IPR000306 GO:0046872
Stsc242667g00004 859 Pfam Transcription factor BRX N-terminal domain 672 705 IPR027988 -
Stsc242667g00004 859 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 412 IPR000408 -
Stsc242667g00004 859 MobiDBLite consensus disorder prediction 735 790 - -
Stsc242667g00004 859 Pfam FYVE zinc finger 432 477 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242667g00004 Stsc-Chr242667 16587 21581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242667g00004 681 850 Major Intrinsic Protein MIP AT1G31880 34.066 1.26e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242667g00004 - - gmx:100806439 1425.99