Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242667g00003 ATGGAAGAATCAGGAGAATTGCAATCAGATGAAAATAAAGCCTCAACGGAGAAGAAAAATAAAAGAAGGCTCAAAACACCTTCCCAGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCACTGAGGAAATGAAACAAGATCTTGCTGAGGAGTTAGGGTTGACAGAGAAGCAAATTTCCGGATGGTTTTGCCACAGAAGGTTAAAAGACAAACGGTTGTTGAAAGATGAAGCCGTTGGTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGACCGTGGCAGTGGACGGCAAGATTCATGCGGAAGCAGTAAACATGGTGATTACCGTTATCTGGATCCGAAAGAGGTAGAAAGTCATGGCGTATACAATCGTGATTTGTCAGTTCCGGATATGACCTACGGACATAGGAACCAGTATACAGAAAACGCAAGCGAAATGGATGATACATCATCTGATAGTGGCTCGTTTTTGCAAGATCGCATGTTTCCTCAAGGCCAGGATCCATACGATATGGATCCTTCAAGATATCCAACTCACAATGGAGCTCTTCCACCCCTTAATCCCAAGGGTGGAAACATCGGATATAAACCATCAGGATATTTGAAAGTCAAGGGCGAGATTGAACATGCTGCTATAACCGCCGTAAAGAAGCAGTTAGGAAGGCATTATCATGAAGATGGTCCACTCCTTGGTATAGAATTTGATCAACCTCCCCCAGGGGCATTTGAAGGCCAAAATGCAGATCCAGTTCACGAACCATATACTATTGCAAATCCTGCACTTCTTACTTCACCAGAAATCTCCACTGGAAAAAGGCAATCCAACGTTAACACAAAATATGATTCGTATGCTAAATTTAGTTCCAAAGATTCACATATGGAAGGGGTTGGATTTGGATCCTTGCATGACTCTGATTTACCGGATAAGCAGGATAAGAAAGCCCGCCACAGTGTTAAACAGAGGCAACCGGCTTATGGTTACGCCAACCATCTTCCTGGCCGGAACTCCTCGGATTTGTATGATGACTCTAATGGAGAAGCATCTGCTTATAATAGCACTAAAGTTTGTAGTATCCTCGCGAAGCATGGTATTGAGGGGATGAGATCTGATTCTGCTTCCAACCATAGTGATCACTATGAAGAGAACCTCATGGTTAAGCAGACAGACTTGATGCAAGGCTACGATAACATCAATCCGAAAAATGTGAAAAGAAGCGAACATGTTAAACCTAAGCCCGCAAGTTTAATCCGTCATCCTCGAATGCCTGTGGATGCTGAAGAAAGGGAGCGACCTATGAGGGAAGAGTTGCATCAGATTGAGAGGAAGGTGAAAAAACAACATCACGATTCTTATGGAGCAAGGATGCTTCCAAATGAAATCACGGGCGCAAAACGGGCAAAAGTTGATCTGCATAAACAATTCAATCCAAAACAAGCATCTATTGCTGAGATAGAACAAAGGAAAAATCCGAGATCCACCGCAGAGATGCCGATGCCATTTAGCTTTAGCGAGGATGAATCCCTCGGCCTCGATTCCAGTTCTTCACTGGATTAA 1569 0.434 MEESGELQSDENKASTEKKNKRRLKTPSQVMALEKFYNEHKYPTEEMKQDLAEELGLTEKQISGWFCHRRLKDKRLLKDEAVGNGRQDRSSGVIQDRGSGRQDSCGSSKHGDYRYLDPKEVESHGVYNRDLSVPDMTYGHRNQYTENASEMDDTSSDSGSFLQDRMFPQGQDPYDMDPSRYPTHNGALPPLNPKGGNIGYKPSGYLKVKGEIEHAAITAVKKQLGRHYHEDGPLLGIEFDQPPPGAFEGQNADPVHEPYTIANPALLTSPEISTGKRQSNVNTKYDSYAKFSSKDSHMEGVGFGSLHDSDLPDKQDKKARHSVKQRQPAYGYANHLPGRNSSDLYDDSNGEASAYNSTKVCSILAKHGIEGMRSDSASNHSDHYEENLMVKQTDLMQGYDNINPKNVKRSEHVKPKPASLIRHPRMPVDAEERERPMREELHQIERKVKKQHHDSYGARMLPNEITGAKRAKVDLHKQFNPKQASIAEIEQRKNPRSTAEMPMPFSFSEDESLGLDSSSSLD 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 88 106 - -
Stsc242667g00003 522 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 518 - -
Stsc242667g00003 522 CDD homeodomain 19 75 IPR001356 GO:0003677
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 1 29 - -
Stsc242667g00003 522 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 138 165 - -
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 7 24 - -
Stsc242667g00003 522 Gene3D - 8 91 - -
Stsc242667g00003 522 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 309 323 - -
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 78 197 - -
Stsc242667g00003 522 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 301 349 - -
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 107 126 - -
Stsc242667g00003 522 SMART HOX_1 18 80 IPR001356 GO:0003677
Stsc242667g00003 522 MobiDBLite consensus disorder prediction 481 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242667g00003 Stsc-Chr242667 2081 6701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242667g00003 3 522 Homeobox Transcription Factor Family AT4G03250 39.286 1.64e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc242667g00003 Homeodomain 9.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242667g00003 - - gmx:100803515 717.613