Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242667g00002 ATGGAAGAATCAGGAGAATTGCAATCAGATGAAAATAAAGCCTCAACGGAGAAGAAAAATAAAAGAAGGCTCAAAACACCTTCCCAGGTTATGGCCTTGGAGAAATTTTATAACGAGCACAAATATCCCACTGAGGAAATGAAACAAGATCTTGCTGAGGAGTTAGGGTTGACAGAGAAGCAAATTTCCGGATGGTTTTGCCACAGAAGGTTAAAAGACAAACGGTTGTTGAAAGATGAAGCCGTTGGTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGACCGTGGCAGTGGACGGCAAGATTCATGCGGAAGCAGTAAACATGGTGATTACCGTTATCTGGATCCGAAAGAGGTAGAAAGTCATGGCGTATACAATCGTGATTTGTCAGTTCCGGATATGACCTACGGACATAGGAACCAGTATACAGAAAACGCAAGCGAAATGGATGATACATCATCTGATAGTGGCTCGTTTTTGCAAGATCGCATGTTTCCTCAAGGCCAGGATCCATACGATATGGATCCTTCAAGATATCCAACTCACAATGGAGCTCTTCCACCCCTTAATCCCAAGGGTGGAAACATCGGATATAAACCATCAGGATATTTGAAAGTCAAGGGCGAGATTGAACATGCTGCTATAACCGCCGTAAAGAAGCAGTTAGGAAGGCATTATCATGAAGATGGTCCACTCCTTGGTATAGAATTTGATCAACCTCCCCCAGGGGCATTTGAAGGCCAAAATGCAGATCCAGTTCACGAACCATATACTATTGCAAATCCTGCACTTCTTACTTCACCAGAAATCTCCACTGGAAAAAGGCAATCCAACGTTAACACAAAATATGATTCGTATGCTAAATTTAGTTCCAAAGATTCACATATGGAAGGGGTTGGATTTGGATCCTTGCATGACTCTGATTTACCGGATAAGCAGGATAAGAAAGCCCGCCACAGTGTTAAACAGAGGCAACCGGCTTATGGTTACGCCAACCATCTTCCTGGCCGGAACTCCTCGGATTTGTATGATGACTCTAATGGAGAAGCATCTGCTTATAATAGCACTAAAGTTTGTAGTATCCTCGCGAAGCATGGTATTGAGGGGATGAGATCTGATTCTGCTTCCAACCATAGTGATCACTATGAAGAGAACCTCATGGTTAAGCAGACAGACTTGATGCAAGGCTACGATAACATCAATCCGAAAAATGTGAAAAGAAGCGAACATGTTAAACCTAAGCCCGCAAGTTTAATCCGTCATCCTCGAATGCCTGTGGATGCTGAAGAAAGGGAGCGACCTATGAGGGTGGTAAAAATTTTGTTGATATATTTGTACTTTCTATACGTGATTGATGTGTGA 1368 0.4284 MEESGELQSDENKASTEKKNKRRLKTPSQVMALEKFYNEHKYPTEEMKQDLAEELGLTEKQISGWFCHRRLKDKRLLKDEAVGNGRQDRSSGVIQDRGSGRQDSCGSSKHGDYRYLDPKEVESHGVYNRDLSVPDMTYGHRNQYTENASEMDDTSSDSGSFLQDRMFPQGQDPYDMDPSRYPTHNGALPPLNPKGGNIGYKPSGYLKVKGEIEHAAITAVKKQLGRHYHEDGPLLGIEFDQPPPGAFEGQNADPVHEPYTIANPALLTSPEISTGKRQSNVNTKYDSYAKFSSKDSHMEGVGFGSLHDSDLPDKQDKKARHSVKQRQPAYGYANHLPGRNSSDLYDDSNGEASAYNSTKVCSILAKHGIEGMRSDSASNHSDHYEENLMVKQTDLMQGYDNINPKNVKRSEHVKPKPASLIRHPRMPVDAEERERPMRVVKILLIYLYFLYVIDV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 78 117 - -
Stsc242667g00002 455 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 88 106 - -
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 147 171 - -
Stsc242667g00002 455 CDD homeodomain 19 75 IPR001356 GO:0003677
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 1 29 - -
Stsc242667g00002 455 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 7 24 - -
Stsc242667g00002 455 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 441 - -
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 309 323 - -
Stsc242667g00002 455 Gene3D - 8 91 - -
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 147 165 - -
Stsc242667g00002 455 MobiDBLite consensus disorder prediction 301 349 - -
Stsc242667g00002 455 SMART HOX_1 18 80 IPR001356 GO:0003677
Stsc242667g00002 455 SUPERFAMILY Homeodomain-like 14 78 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242667g00002 Stsc-Chr242667 1923 6701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242667g00002 3 401 Homeobox Transcription Factor Family AT4G03250 43.382 6.02e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc242667g00002 Homeodomain 7.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242667g00002 - - gmx:100803515 662.529