Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242658g00002 ATGATGGAACAAGTTGAGAATTTTCCAAGTTTCAGGTCTTCCATGAACAATTCATCAAGGAACTCAACGAGGGAAGTGACTTTTGGCCACTCAGATTCCAAGAATGTGAGGTATGGGTCAAAGGGTGCTGCTGACTCTGGAGCTCTTAGCATGTCTCAGAAGGAAATCAGTGATGAGGATGCAAGATTGGTGTATGTTGATGATCCTGATAGGAGAAATCAGAGGTACGAATTTTCCGGGAACTCGATTCGGACTAGCAAGTACTCAATTATCACATTTCTTCCAAGGAACTTGTTTGAACAGTTTCATAGAGTTGCTTACATTTACTTTCTCATAATTGCAATCCTTAATCAGCTGCCTCAGCTTGCTGTTTTCGGCAGAGGTGTTTCCGTTTTGCCACTGGCATTTGTTTTGTTTGTTACTGCTGTAAAGGATGCTTTTGAGGACTGGAGGAGGTATAAATCGGACAAAGTCGAGAATAACCGGATTGCGACCGTTATGGTTGACGGCCGGTTTCAAGGGAAGAAGTGGAAGGATGTAAGAGTTGGTGAGGTCATTAAGATTTTGGCAAACGAAACCCTCCCTTGTGATATTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTATTAACCTTGATGGAGAGTCTAATTTGAAGACTCGGTATGCGAAACAAGAGACTCAAGCAACGGTGCCGGAGAAGGAGAGGTTTATTGGGTTGATTAAGTGTGAGAAGCCAAATAGGAACATATACGGATTTCAGGGTAACATGGAAGTTGATGGGAAGAGGTTGTCACTTGGGTCCTCCAATATTGTCCTTAGAGGCTGTGAACTCAAGAATACTAATTGGGCTGTTGGTGTTGCCGTGTATTGTGGCCGCGAGACCAAAGCAATGCTCAACAACTCGGGTGCTCCGTCGAAGAGGAGCCAGCTTGAGACTCACATGAACTTGGAGATCATTATGCTTTCTGTCTTTCTTGTAACATTGTGTACAGTCACCTCGGTGTGTGCCGCTGTTTGGTTAAAGATCCACAATAGTGAGCTGGATTTGTTGCCTTATTACAGGAAACTAGATTTTTTGGAAGGTGAAAGAGAAAGCTATGAATATTATGGATGGGGATTGGAAATCCTATTTACTTTCCTTAAGTCAGTTATTGTGTTCCAGGTCATGATCCCCATATCCTTGTACATATCCATGGAGCTTGTCCGTGTTGGTCAGGCATATTTCATGAGCCGGGACTCAAGAATGTATGATGCAGCAACAGATTCAAAATTTCAGTGCAGGGCTCTGAACATTAATGAAGACTTAGGCCAAATTAAATATGTCTTCTCTGACAAAACCGGTACACTTACTGAGAACAAGATGGAGTTCCAATGTGCGAGCATCTGGGGGGTCGATTACAGCTCCACGGAAGTGAGTTTGGAGCATGGGCAACAAGCTGAATGCTTTTCTCAAGTGGATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTCAATCAAGAGCTTTTGCAGTTATCAAAAAATGGATTTAGAGACGTTGAGGGAAAACAAATATATGATTTTTTCTTAGCACTGGCAGGCTGCAATACAATTGTACCTCTTCTTGTTGATACATCTGATCCTACAGTTAAGCTTATAGATTACCAAGGAGAATCTCCAGATGAGCAAGCATTAGCATATGCTGCTGCTGCCTATGGCTTCATGCTCATAGAACGAACCTCAGGTCACATAGTCATTGATATTCATGGAAAAAGACACAGGTTCAATGTCTTGGGTTTGCATGAATTCGACAGTGATCGAAAGCGGATGTCAGTTATCTTGGGGTACACAGACAATTCTGTGAAACTTTTTGTAAAAGGAGCAGATACATCCATGCTTAGTGTGATAGATAAATCATTGAACACTGAAATATTACGAGCAACTGAAACCCATCTTTACTCTTACTCGTCCCTGGGTTTGAGGACACTTGTTGTCGGAATGAGGGAGCTGAGCGTGTCGGAATTCGATCAATGGCGCTTTGCCTTTGAAGCAGCAAGTACTTCTTTGATTGGAAGGGCTGCCATGCTTCGCAAGGTTGCTAGCAATGTAGAGAATAATCTTTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGAAAGGAGTACCAGAATCTATCGAGTCTCTAAGGACTGCGGGTATTAAAGTATGGGTATTGACTGGGGACAAACAGGAAACTGCCATATCAATTGGCTACTCCTCGAAGTTCCTGACAAACAACATGACTCAAATTATAATCAATAGCAACAATAGAGAGTCCTGTAGAAGACATTTACGGAATGCTCTTGTCAAGTCTAGACAACCATTGGCTGCATCTGCAGTTTCCAGCAATTCTGAAGGAATTTCTGATGCTATTACTACACCGATAGCCTTGATTATTGACGGTACAAGCCTTGTGTATATTCTTGACAGTGAACTTGAAGAAGAGCTCTTTGAACTTGCAAGTGGATGTTCTGTTGTTCTATGTTGTCGAGTGGCTCCATTACAAAAGGCTGGAATTGTTGCCCTTGTGAAGAAAAGGACAGCTGACATGACTCTAGCCATTGGAGATGGTATGAAATCTTTCGCTTGCTTGTTTCCTTGA 2643 0.4253 MMEQVENFPSFRSSMNNSSRNSTREVTFGHSDSKNVRYGSKGAADSGALSMSQKEISDEDARLVYVDDPDRRNQRYEFSGNSIRTSKYSIITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSVLPLAFVLFVTAVKDAFEDWRRYKSDKVENNRIATVMVDGRFQGKKWKDVRVGEVIKILANETLPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETQATVPEKERFIGLIKCEKPNRNIYGFQGNMEVDGKRLSLGSSNIVLRGCELKNTNWAVGVAVYCGRETKAMLNNSGAPSKRSQLETHMNLEIIMLSVFLVTLCTVTSVCAAVWLKIHNSELDLLPYYRKLDFLEGERESYEYYGWGLEILFTFLKSVIVFQVMIPISLYISMELVRVGQAYFMSRDSRMYDAATDSKFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSTEVSLEHGQQAECFSQVDGKVLKPKMKVKVNQELLQLSKNGFRDVEGKQIYDFFLALAGCNTIVPLLVDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHGKRHRFNVLGLHEFDSDRKRMSVILGYTDNSVKLFVKGADTSMLSVIDKSLNTEILRATETHLYSYSSLGLRTLVVGMRELSVSEFDQWRFAFEAASTSLIGRAAMLRKVASNVENNLCILGATAIEDKLQKGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKFLTNNMTQIIINSNNRESCRRHLRNALVKSRQPLAASAVSSNSEGISDAITTPIALIIDGTSLVYILDSELEEELFELASGCSVVLCCRVAPLQKAGIVALVKKRTADMTLAIGDGMKSFACLFP 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242658g00002 880 Gene3D - 553 686 IPR023299 GO:0000166
Stsc242658g00002 880 Pfam Phospholipid-translocating ATPase N-terminal 64 128 IPR032631 -
Stsc242658g00002 880 MobiDBLite consensus disorder prediction 1 54 - -
Stsc242658g00002 880 SUPERFAMILY Calcium ATPase, transmembrane domain M 73 442 IPR023298 -
Stsc242658g00002 880 SUPERFAMILY Calcium ATPase, transduction domain A 161 302 IPR008250 -
Stsc242658g00002 880 FunFam Phospholipid-transporting ATPase 136 305 - -
Stsc242658g00002 880 Gene3D - 705 878 IPR023214 -
Stsc242658g00002 880 SUPERFAMILY HAD-like 435 872 IPR036412 -
Stsc242658g00002 880 MobiDBLite consensus disorder prediction 7 29 - -
Stsc242658g00002 880 FunFam Phospholipid-transporting ATPase 709 878 - -
Stsc242658g00002 880 PRINTS P-type cation-transporting ATPase superfamily signature 855 867 - -
Stsc242658g00002 880 PRINTS P-type cation-transporting ATPase superfamily signature 732 742 - -
Stsc242658g00002 880 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Stsc242658g00002 880 Gene3D - 138 305 - -
Stsc242658g00002 880 FunFam Phospholipid-transporting ATPase 553 686 - -
Stsc242658g00002 880 NCBIfam HAD-IC family P-type ATPase 380 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242658g00002 880 Pfam Cation transport ATPase (P-type) 558 633 - -
Stsc242658g00002 880 NCBIfam phospholipid-translocating P-type ATPase 78 872 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc242658g00002 880 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 61 872 - -
Stsc242658g00002 880 Pfam E1-E2 ATPase 162 406 - -
Stsc242658g00002 880 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Stsc242658g00002 880 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 722 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242658g00002 Stsc-Chr242658 12866 17061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242658g00002 13 871 Primary Pumps ATPases AT5G04930 68.293 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242658g00002 K14802 - gmx:100784988 1373.99