Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242651g00005 ATGAAATTTGAGGTGGGCTCAGGTGTTTGCGGCGGTGGTGGCGGTGGTAGCAGTGGCGGTGGCGGCTATTGGAATTGGAACGATGATGAAGAAGAAAAATCCATGGTGGTGAAGATACTTGGAAAACATGCTTTTGATTACTTGACTTCAAACTCCTTTATCACCAATGAGAGCATGTTAATGGCAACAATGAGTTTGGAGAATCTTCAGAACAAGCTCTCTGATCTTGTTGAACGACCCAACTTCAACAATTTCAGTTGGAACTACGCGATCTTCTGGCAGGTTTCAGAGTCAAAATTAAAAAAAGATTGTGTTGTTCTTGGTTGGGGCGATGGTTGTTGCAGAGAACCAATGGAAGGTGAAAAAGAACTTAAAAAGATAGAAGCTTTGAGACTTAGTTTTGATGATGATGAAGTTATTCAAAGAATGAGGAAGAGGGTATTGCAAAAGCTTCACACGATGTACTTCTCTTTTCCCAAGGGTTATGGTGGTCCAGGTAAGTGCTTTGAACTTGGTAAGCACTTGTGGATTTGTTGCGATGATGATAAAGATGGTGATAATGAGTTTTTGAATTGTGATTCTGATTATTATGTGAGGGCATTTTTGGCAAAATCAGCTGGGATTAAAACTGTCGTTTTGATTCCTACTGAATTAGGTGTTGTTGAATTGGGTTCTGTGAGGATTGTTGATGAGAATCTTGATTTGTTAAAAACTGTGTACTCTGTTTTTTCTCCTCCCTTTGCTCATTCATCATTATTCAATGGTTTTGTAAATGTCAACAGAGATGAAGAAAAATTTTTCTGTGGCATTGATATTGGGGATAGAGATATTAGGGTTATGGATCATAGACTTGAGGGTGTTCCGGTTCCAAAGATTTTTGGTAAGGAGTTGAAGGTTGTAAATTTGAATTTAGGGAGAAAAATTTTTAAGAAGAAACTTGCAGCAAGGAAAATTGAAGAAAGGAAATCATGGAGTACTTACCCTAATGAGAGTAATGGAATTCGATCTTTGAAGAATGCTAGGGATGGTGCTAATGGTTCAAGTTTAGGAGGTACTCAAGGTTTGAGACAAGGTTGCCCTGGAATTTTCGCTCCAATTCATCCATCCTGCACCAGTAACGTGGCAAAACAAGTTGATTGGGGGAATGATTTTTTGCTTGAAAAGTTTCAACCACCACAACAAGCGCCGATTCACATTGACTTTGGAGTAGGATCAATAGTTGGCGAACGTGAGGTTTTGAACAATAGCTTGTCGTGCAAAGACGAGAAGTCAGGTGTGACACAAGAAAGGAGACCTAGGAAGCGAGGCAGAAAGCCTGCTAATGGTAGGGAAGAGCCTCTCAATCATGTGGAGGCAGAGAGGCAGAGGCGCGAGAAACTTAACCAGCGATTCTATGCTTTGCGTGCGGTTGTACCTAATATCTCCAAGATGGATAAGGCATCGTTATTGGGAGATGCCATTGCTCACATCAATGAGTTGCAAGCTAAATTGAAGGTCTTGGAATCCGAAAAACCAACTTTTGGAAACGCTTCCAAGGTTGGTTCATCAAGATTTGAGGTCAATCATGAAGAAATGACTTGTTCTTCCGAGGTGGATATTGAAGCTAACCAAAAAGTTGTGATTGTGAGAGTGAGTTGTCCTATTGATCTTCACCCTGCATCAAAATTGTTCCAAGCATTAAAAGATTCCGATATGATGAGTGTTCTTGAGTCCACACTTGATGCTACAAACAAACACGTCTTTCACACATTTGTGATTAAATCCCATGAGTCCGAACAACTTACAAAGGAGAAGGTGCTTGCAGCAGTTTCCGGTGAATCCAACTCAAGAAAACCGGATTAA 1842 0.405 MKFEVGSGVCGGGGGGSSGGGGYWNWNDDEEEKSMVVKILGKHAFDYLTSNSFITNESMLMATMSLENLQNKLSDLVERPNFNNFSWNYAIFWQVSESKLKKDCVVLGWGDGCCREPMEGEKELKKIEALRLSFDDDEVIQRMRKRVLQKLHTMYFSFPKGYGGPGKCFELGKHLWICCDDDKDGDNEFLNCDSDYYVRAFLAKSAGIKTVVLIPTELGVVELGSVRIVDENLDLLKTVYSVFSPPFAHSSLFNGFVNVNRDEEKFFCGIDIGDRDIRVMDHRLEGVPVPKIFGKELKVVNLNLGRKIFKKKLAARKIEERKSWSTYPNESNGIRSLKNARDGANGSSLGGTQGLRQGCPGIFAPIHPSCTSNVAKQVDWGNDFLLEKFQPPQQAPIHIDFGVGSIVGEREVLNNSLSCKDEKSGVTQERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAHINELQAKLKVLESEKPTFGNASKVGSSRFEVNHEEMTCSSEVDIEANQKVVIVRVSCPIDLHPASKLFQALKDSDMMSVLESTLDATNKHVFHTFVIKSHESEQLTKEKVLAAVSGESNSRKPD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242651g00005 613 CDD bHLH_AtAIB_like 441 504 - -
Stsc242651g00005 613 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 243 IPR025610 -
Stsc242651g00005 613 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 447 506 IPR036638 GO:0046983
Stsc242651g00005 613 Coils Coil 483 503 - -
Stsc242651g00005 613 PANTHER MYC 57 602 IPR045084 GO:0003700|GO:0006355
Stsc242651g00005 613 MobiDBLite consensus disorder prediction 438 455 - -
Stsc242651g00005 613 Pfam Helix-loop-helix DNA-binding domain 448 494 IPR011598 GO:0046983
Stsc242651g00005 613 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 444 493 IPR011598 GO:0046983
Stsc242651g00005 613 SMART finulus 450 499 IPR011598 GO:0046983
Stsc242651g00005 613 MobiDBLite consensus disorder prediction 418 455 - -
Stsc242651g00005 613 MobiDBLite consensus disorder prediction 326 351 - -
Stsc242651g00005 613 Gene3D - 437 507 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242651g00005 Stsc-Chr242651 14188 16116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242651g00005 22 606 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 41.782 1.63e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242651g00005 bHLH-MYC_N 1.4e-38 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242651g00005 - - aip:107623716 853.588