Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242639g00004 ATGCCACCCATGTCTCAAAAACCCGTCTTCATGTTCCTCTTAGTCCTTGTTATTGTAAAACTGTGTTCAGTTGCAAGTGAAAAGAGTGAAGCAAATGCACTGTTAAAGTGGAAGGCCAGCCTTGATAACCAAAGCCAAGTTGTTTTATCATCTTGGAAGAACGGGACTAGTCCATGCACAACATGGACAGGAATTCAATGTGATACATCCAATTCCGTAACTGCCATCAATCTTGAAAATAATCTTCTCAAAGGTACACTCCATGCTCTACACTTTTCTTCACTCCCCAACCTCCTCACCTTTAACATCTTCAACAACTCATTTCATGGAACCATCCCCCCTCAAATTGGTAACATGTCCAAAATCAGTCGTTTCAACTTTTCTTTAAATCCCCTTGATGGTTCCATCCCTCGAGAGATGTGGACACTCACGAGCTTACGCCAGCTTGATCTTTCCTACTACTCCCTATGGAACATGTCTAAGCTGACCACCTTGTGGCTTCATTCCAATCAACTTTCTGGAACTATTCCTACCTCAATAGGAAACTTGGTCAATCTGGAGTCCCTTCATGTGCAGGACAACCAACTTTCAGGATCCATTCCTTCCACAATTGGCAACATGACAAAGCTCACAGAAATAATTCTGAGAAACAATTCTTTTTCTGAGTCAATTCCTGCTTCTATGGGCAATTTGATCAACTTGGAAATCTTAAGTCTTGTACAAAACAGTCTCTCTGGATCTATTCCTGACACACTTGGAAACTTGAAAGGGCTCTTCTACTTTGAGTTGTCCTCCAACATGCTTAGTGGCAACATTCCGCAAGCCATTAATAACCTTACCAACATGATTTACTTTCTTGTAGACAACAACCATCTCAAAGGCCACTTGCCGCCTCAAATCTGCTTAGGACGTTCACTAGAGAACTTAAATGCTCAAAACAATCATTTTACCGGTCCAGTACCAAGCAGCTTGAAGAAATGCTCTAGTATTCTCACGATAACTTTACAGGATAACCATTTGGAAGGAGACATATCACAATACTTTGGTGTTTATCCAAATTTGAAATACATTGATGTAAGCAACAATAAATTTTATGGCCAAATTTCAACAAACTGGAGCAAGTGCGATAGTCTTGAAAACTTCATCATTGCCAAAAATAATATTTCCGGTGGTATACCGCCACAAATTGCTGAGGCTACCAAGCTGGGCAAGCTTCACCTTTTTTCAAATCAATTGACCGGAAATATTCCAAAAGAACTGGGGAAAATGGAAAACTTGGTTGAACTCAAGATAGGCAACAATCATCTTTCTGGAAATATTCCATCAGAGATAGGATTGTTGCAAGGCCTCTCGCTGTTGCATCTAGGAGGAAATGACTTGACTGGCATCATACCGAAAGAAGTTGTTCAGTTACCCAAATTGTTGGAATTGAAGTTGAGCAACAACAAACTAGAGGGAAGCATACCCTCTGACTTCAAGTCATCGCAACCTCTCTATTCTCTTGATCTTAGTGGCAATTTGTTGAATGGAACAATACCAACAGTGCTTGGAGAACTGAAGCAATTGCAATGGTTGAATCTCTCTCACAACAACCTCTCTGGCAATATTCCATCCAGTTTTGATAGCATGTCAGCCTTGATTTCTGTCAACATATCATACAACCAGTTAGACGGGCCTCTTCCAGATAATAGAGCCTTTCTTCATGCCTCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTCACTGGCTTGGTGCCGTGCCCAAGCAGCAGTCCAAGGCGCAAAAGCCACAAGGTCTTGTTATTGGTTTTACTTGTTATCTTTGGAGTACTAGCACTGGCACTTTGTGTGATTGCTGTTTCAGTATATATTCTTTGTAGAAAAGCAGGAAAGAAAGAAGACCCGGCTAAAGAAATGCAACCAGAAGAACTCTTTTCCATATGGAGCCATGATGGAAAATTGACATTTGAAGCGATCATTGAAGCTACCAATAATTTTGATGACAACTATCTCATTGGAATTGGTGGGCAAGGATCCGTTTACAGGGCTGAGTTACCTTCAGGTATGGTTGTTGCTGTGAAGAAACTTCATCCGGAATCAGATGCAAAGGACAAATACAATTTGAAAGCATTTGAGAATGAAATCAAAGCATTGACAGAAATCAGGCACCGCAACATCATAAAGCTATATGGATTTTGCCAGCATTCACGGTTCTCATTTTTGGTTTACAAGTTCTTGGAAGGGGGAAGTTTGGATAAAGTACTCAGTATTGAAAAACAAGCAATTGAATTTGATTGGGAGAGGAGGGTGAATATGGTTAAAGGAGTTGCTAATGCTTTGTCGTACATGCATCATGATTGCAAACCCCCTATAGTTCATCGCGACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAGGCTCATGTCTCTGATTTTGGGACTGCTAAGGTTCTTAAGCCAGGTTCAAATTGGACCACACTTGCAGTCACCTATGGTTATGGAGCTCCAGAGCTTGTTCAAACTATGGAAGTGACCGAAAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTTGAGATCCTTCTGGGAAAACATCCAGCAGACCTCATAAGTTCATTGTTATCACCATCAACAGCATCAATAACATACAATTTGTTATTGCTTGATGTCATAGATCAGAGGCCTTCCCATCCTGAGAAGTCAGTGGTTGGGGAAATAATGTTGATCACAAAGTGGGCACTTAGGTGTTTGAGCCAAAATCCACAATTTCGGCCAAGCATGCATCAAGTTTCTAAAGAACTCATGATGGGAAAAGCATCTTTCGATGATGAGCACTTTCCCATTATCAGACTTGGACAACTCAATGAAGAATTGGAAAGTCCACTCATGTGA 2907 0.4056 MPPMSQKPVFMFLLVLVIVKLCSVASEKSEANALLKWKASLDNQSQVVLSSWKNGTSPCTTWTGIQCDTSNSVTAINLENNLLKGTLHALHFSSLPNLLTFNIFNNSFHGTIPPQIGNMSKISRFNFSLNPLDGSIPREMWTLTSLRQLDLSYYSLWNMSKLTTLWLHSNQLSGTIPTSIGNLVNLESLHVQDNQLSGSIPSTIGNMTKLTEIILRNNSFSESIPASMGNLINLEILSLVQNSLSGSIPDTLGNLKGLFYFELSSNMLSGNIPQAINNLTNMIYFLVDNNHLKGHLPPQICLGRSLENLNAQNNHFTGPVPSSLKKCSSILTITLQDNHLEGDISQYFGVYPNLKYIDVSNNKFYGQISTNWSKCDSLENFIIAKNNISGGIPPQIAEATKLGKLHLFSNQLTGNIPKELGKMENLVELKIGNNHLSGNIPSEIGLLQGLSLLHLGGNDLTGIIPKEVVQLPKLLELKLSNNKLEGSIPSDFKSSQPLYSLDLSGNLLNGTIPTVLGELKQLQWLNLSHNNLSGNIPSSFDSMSALISVNISYNQLDGPLPDNRAFLHASIESLKNNKGLCGNVTGLVPCPSSSPRRKSHKVLLLVLLVIFGVLALALCVIAVSVYILCRKAGKKEDPAKEMQPEELFSIWSHDGKLTFEAIIEATNNFDDNYLIGIGGQGSVYRAELPSGMVVAVKKLHPESDAKDKYNLKAFENEIKALTEIRHRNIIKLYGFCQHSRFSFLVYKFLEGGSLDKVLSIEKQAIEFDWERRVNMVKGVANALSYMHHDCKPPIVHRDISSKNILLDSEYEAHVSDFGTAKVLKPGSNWTTLAVTYGYGAPELVQTMEVTEKCDVYSFGVLCFEILLGKHPADLISSLLSPSTASITYNLLLLDVIDQRPSHPEKSVVGEIMLITKWALRCLSQNPQFRPSMHQVSKELMMGKASFDDEHFPIIRLGQLNEELESPLM 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242639g00004 968 SUPERFAMILY Protein kinase-like (PK-like) 649 939 IPR011009 -
Stsc242639g00004 968 SUPERFAMILY L domain-like 324 582 - -
Stsc242639g00004 968 FunFam Nuclear pore complex protein NUP107 27 155 - -
Stsc242639g00004 968 PANTHER LEUCINE RICH REPEAT KINASE 2 229 944 - -
Stsc242639g00004 968 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515
Stsc242639g00004 968 Gene3D Ribonuclease Inhibitor 26 154 IPR032675 -
Stsc242639g00004 968 Gene3D Transferase(Phosphotransferase) domain 1 749 951 - -
Stsc242639g00004 968 Gene3D Ribonuclease Inhibitor 155 302 IPR032675 -
Stsc242639g00004 968 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Stsc242639g00004 968 FunFam Leucine-rich repeat receptor protein kinase MSP1 632 748 - -
Stsc242639g00004 968 FunFam Leucine-rich receptor-like protein kinase family protein 156 250 - -
Stsc242639g00004 968 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Stsc242639g00004 968 ProSitePatterns Tyrosine protein kinases specific active-site signature. 794 806 IPR008266 GO:0004672|GO:0006468
Stsc242639g00004 968 ProSiteProfiles Protein kinase domain profile. 669 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242639g00004 968 FunFam MDIS1-interacting receptor like kinase 2 749 945 - -
Stsc242639g00004 968 SMART LRR_typ_2 279 303 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 471 494 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 159 182 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 183 207 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 231 255 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 519 542 IPR003591 -
Stsc242639g00004 968 SMART LRR_typ_2 423 447 IPR003591 -
Stsc242639g00004 968 Gene3D Phosphorylase Kinase; domain 1 630 748 - -
Stsc242639g00004 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 279 594 - -
Stsc242639g00004 968 SUPERFAMILY RNI-like 76 389 - -
Stsc242639g00004 968 Gene3D Ribonuclease Inhibitor 303 598 IPR032675 -
Stsc242639g00004 968 Pfam Protein kinase domain 672 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242639g00004 Stsc-Chr242639 16618 19971 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242639g00004 13 841 Receptor kinase-like Gene Family AT4G08850 42.516 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242639g00004 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242639g00004 - - ahf:112744368 1150.58