Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242639g00001 GACATATCAAGCAAGAACATTCTTTTGGACTCAGAATATGAGGCTCATGTCTCTGACTTTGGGACTGCTAAGTTTTTGAAGCCAGATTCAAATTGGACCACACTTGCAGTCACCTATGGCTATGGAGCTCCAGAGCTTGTTCAAACTATGGAGGCTACCGAAAAATGTGATGTATATAGCTTTGGAGTGCTTTGTTTTGAGATCCTTATGGGAAAACATCCAGCAGATCTGATAAGTTCATTGTTGTCACCATCAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTAATAGATCAGAGGCCTCCCCATCCTGAGAAGTCAGTTGTTGGGGAAATAATGTTGATCACTAAGTGGGCACTTGAGTGTTTGAGCCAAAGTCCACAATTTCGGCCAAGCATGCATCAAGTTTCTAAAGAACTAATGAATGGAAAAGCACCTTTCGATGATGACCACTTTCCCATGATCAGACTCGGACAACTCAATGAAGAATTGGAAAGTTCACTCATGTGA 516 0.4089 DISSKNILLDSEYEAHVSDFGTAKFLKPDSNWTTLAVTYGYGAPELVQTMEATEKCDVYSFGVLCFEILMGKHPADLISSLLSPSTASITYNLLLVDVIDQRPPHPEKSVVGEIMLITKWALECLSQSPQFRPSMHQVSKELMNGKAPFDDDHFPMIRLGQLNEELESSLM 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242639g00001 171 Pfam Protein kinase domain 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242639g00001 171 PANTHER LEUCINE RICH REPEAT KINASE 2 1 146 - -
Stsc242639g00001 171 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242639g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 1 158 - -
Stsc242639g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 1 147 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242639g00001 Stsc-Chr242639 1 894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242639g00001 1 145 Receptor kinase-like Gene Family AT5G49660 37.500 2.15e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242639g00001 Pkinase 9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242639g00001 - - aip:107635237 293.508