Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242638g00003 ATGAGGATGAGTTGTAACGGATGCAGGGTCTTAAGAAAAGGTTGCAGCGAAGATTGTAGCATAAGACCATGCCTGAATTGGATAAAGAGCCCTGACTCACAAGCAAATGCTACTATCTTCCTTGCCAAGTTTTATGGCCGCGCTGGCCTCATCAACCTCATCAACGCCGGCCCCGATCACCTTCGTCCTGCGATTTTTCGTTCGTTACTATATGAAGCATGCGGCCGAATTGCGAACCCGATATATGGATCAGTGGGTTTGTTGTGGTCGGGGAGCTGGCACTTGTGCCAACTCGCCGTCGAAGCGGTTTTGAAGGGAGCGCCGATCACGCCGATAAATTCGGAGGTGGCGGAGAGTGGGCGGGGCCCACCCTTCAAGGCTCATGACATACGCCACGTGTCCAAGGCTGATAACAACAACGCCGCAACCGAAACTAAGCGAGTCAAGACTCGCTCCCGAGTCAAGCGGCCTGCTGGAGACGTAAAGCCTAAGGAGGAGTCCAACCGAACCGGGTTCGATCCGGTCGAGAAGGTGAAGCGCGCGTCGAGTCACGAGTCGTCGCTGAGCCACGAACGGTTCGAGGCGGTTGCTACGGGTGTGGAGGGAGAGAGCAGGGAGATGGAAAGCGAGGTGTCGGTGGAGAATTCGGTTCGGTTCCATGATGAGGAAGCGGATTGTGATGGAAAGGGGAGTGGTGGTTCGGGGGAAGTGTGCGGCAACGAGGTTGGGTTGGAGCTGAGGCTGGGGTTTGAACCGGTGTCACGTGAGGATCACGTGGTGGTGCCAATGAAGAAGAGGAGAATTGATTTGAAGGATTTTTGTGGCGGGGAAAGTGGTGATAACGGTTCGTGCAAGATGGAACTGGGGCTTCCGTTTTCAACGGTTCAGTTTTGA 894 0.547 MRMSCNGCRVLRKGCSEDCSIRPCLNWIKSPDSQANATIFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIANPIYGSVGLLWSGSWHLCQLAVEAVLKGAPITPINSEVAESGRGPPFKAHDIRHVSKADNNNAATETKRVKTRSRVKRPAGDVKPKEESNRTGFDPVEKVKRASSHESSLSHERFEAVATGVEGESREMESEVSVENSVRFHDEEADCDGKGSGGSGEVCGNEVGLELRLGFEPVSREDHVVVPMKKRRIDLKDFCGGESGDNGSCKMELGLPFSTVQF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242638g00003 297 Coils Coil 295 297 - -
Stsc242638g00003 297 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Stsc242638g00003 297 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Stsc242638g00003 297 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 210 - -
Stsc242638g00003 297 PIRSF AS2 1 290 IPR017414 -
Stsc242638g00003 297 MobiDBLite consensus disorder prediction 142 191 - -
Stsc242638g00003 297 MobiDBLite consensus disorder prediction 133 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242638g00003 Stsc-Chr242638 14379 16055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242638g00003 1 290 AS2 family AT3G02550 57.823 7.34e-101 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc242638g00003 LOB 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242638g00003 - - aprc:113867933 356.681