Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242637g00004 ATGGAAATCATGGTTGATGACACTGCTTCACTTCGTGCCAACCGTGTGCAAGGATATTGTTTTACACCGTCCCCTATTATTACCAACAGAGGTAATGATAATCAAGGAGAAAAGAATGGCATTGCCATTACATGGGAGAATTTGGAGGTCACTGTCACAAATGGAAAGGAAGGAAAGCAAATTCTGCATGGCCTCACAGGTTATGCAAACCCAGGAAAGCTTTTAGCTTTAATGGGACCTTCAGGATGTGGCAAATCCACACTTCTTGATGCCTTATCAGGAAGATTGAGTACAAACATGAAGCAAAAAGGGAAGATTCTAATCAATGGCCACAAACAATCATTGGCTTATGGAACTTCAGGGTATGTAACACAAGAAGCTGCTATCCTATCAACCTTAACAGCTGGGGAAACTCTATACTACTCAGCTCAGCTCCAATTTCCAGATTCCATGTCAGCAGCAGAGAAGAAGGAAAGAGCTGATATCACACTAAGAGAGATGGGCCTGCAAGATGCCATTAACACAAGAGTTGGAGGATGGGGTGCAAAAGGCCTAAGTGGGGGACAAAAGAGGAGACTCAGCATTTGCATTGAGATCCTAACACGCCCTAGACTTCTGTTTCTGGATGAACCAACAAGTGGTCTTGATAGTGCAGCCTCCTATTATGTCATGAGTGGAATTGCACATCTTAGTCAAAGAGATGGAATTCAGAGGACTATAGTTACATCCATTCATCAACCTAGCAGTGAAGTTTTTGATCTGTTTCATGACTTATGTCTTTTGTCTTCTGGTGAAACAGTATATTTTGGTCCTGCCTCTGATGCTAATCAGTTTTTTGCTTCAAATTGCTTCCCTTGTCCAATTCTCCACAATCCGTCTGACCATTTCTTAAGGATCATAAACAAAGATTTTAATGAGGATATTGAACAAGGTTTTGGTAAAGAAGTGACAACAGAAGAAGCAATTGATATCCTTGTTAAGTCTTATAAATCCTCCAAAATTAGAGATGAAGTTCTGAATGAAGTGGCAAAAATAAGTGAAAGCTGCTTGGTGCTCACAAGAAGATCCTTCCTGCAAAAGTATCGTGACATAAGCAATTACTGGTTGCGTCTCGCTATCTTTCTTCTCACAGCTATGAGCGTGGCATCCATCTACTATAACATTGGATCAACTCCTGCATCTATTCAGGGCAGAGGATCCATGCTTGGCTTTACTATTTCTGTTCTGGCTTTCATGACACTTGTTGGTGGACTCTCCCCACTGATAGAGGAAATGAAGGTATTTGAAAGAGAGAGATTGAATGGGCACTATGGTGTTTCTGCATTCCTGATAGGGAACATATTATCAGCAGTACCATTCATGCTAGTAACATCTCTGATTCCAGGAGGAATAATCTACTACCTAGCAGGGATGCACAAAGGAGTAGAACACTTTGTGTACTTCATATGCGTTCTATTTGCAATAGTGATGTGGGTTGAGAGCATGATGATGGTTATAGGGAGCATCCTCTCCAACTTCCTAATGGGAATAGTGATTGCAAGTGCAGTTGAAGGGTTGAGTATCTTGACATGTGGGTTCTATAGGCTGCCCAATGATCTTCCAAACCCAGTGTGGAAATACCCTCTCTACTATGTCTCGTTTCTCATGTATGCTCTGCAAGGATTGTTCAAGAATGAATTTGAAGGGTTAACGTTTGTTGTGGATGAAGAAGGTATTAGTGGCAGAGACATTTTGACAAACACATGGCAGGTGGAGATGGAAAGGTCAAAATGGGTTGACCTTGGAATCATGTTTGGAATGATTGTTGTGTACAGAGTTGCGTTCTTGGGAATTACAAAGAGCAAGGAGAAGTTGAAGCCTGTTGTTGCTTCCATTAAGTGTTCTCAAACTAAAGTTTTCGCCACAGGTTCTGGAATCGCTGCTCAATCAGATACTATATCCGAATTAAGGCCATGCAAAACTGGGAGCACTATTCATACCTCAGAATGA 1989 0.4148 MEIMVDDTASLRANRVQGYCFTPSPIITNRGNDNQGEKNGIAITWENLEVTVTNGKEGKQILHGLTGYANPGKLLALMGPSGCGKSTLLDALSGRLSTNMKQKGKILINGHKQSLAYGTSGYVTQEAAILSTLTAGETLYYSAQLQFPDSMSAAEKKERADITLREMGLQDAINTRVGGWGAKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSGIAHLSQRDGIQRTIVTSIHQPSSEVFDLFHDLCLLSSGETVYFGPASDANQFFASNCFPCPILHNPSDHFLRIINKDFNEDIEQGFGKEVTTEEAIDILVKSYKSSKIRDEVLNEVAKISESCLVLTRRSFLQKYRDISNYWLRLAIFLLTAMSVASIYYNIGSTPASIQGRGSMLGFTISVLAFMTLVGGLSPLIEEMKVFERERLNGHYGVSAFLIGNILSAVPFMLVTSLIPGGIIYYLAGMHKGVEHFVYFICVLFAIVMWVESMMMVIGSILSNFLMGIVIASAVEGLSILTCGFYRLPNDLPNPVWKYPLYYVSFLMYALQGLFKNEFEGLTFVVDEEGISGRDILTNTWQVEMERSKWVDLGIMFGMIVVYRVAFLGITKSKEKLKPVVASIKCSQTKVFATGSGIAAQSDTISELRPCKTGSTIHTSE 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242637g00004 662 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 288 IPR003439 GO:0005524
Stsc242637g00004 662 Pfam ABC-2 type transporter 245 307 IPR043926 GO:0140359
Stsc242637g00004 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 277 IPR027417 -
Stsc242637g00004 662 CDD ABCG_EPDR 40 270 - -
Stsc242637g00004 662 Pfam ABC transporter 63 213 IPR003439 GO:0005524
Stsc242637g00004 662 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 36 628 - -
Stsc242637g00004 662 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
Stsc242637g00004 662 Gene3D - 41 284 IPR027417 -
Stsc242637g00004 662 FunFam ABC transporter G family member 11 41 328 - -
Stsc242637g00004 662 SMART AAA_5 71 260 IPR003593 GO:0016887
Stsc242637g00004 662 Pfam ABC-2 type transporter 349 560 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242637g00004 Stsc-Chr242637 14670 17840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242637g00004 60 249 Calmodulin-binding Proteins AT2G36910 31.818 9.21e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242637g00004 K05681 - gmx:100792425 896.345