Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242637g00003 ATGGGAGGCACTCAGGGAGAAGAAAAGGAAGAAGTAACACTAACATGGGAGAATCTGTGGGTGACTGTTGCAGATGGAAAGAAAAGGAAACCAATTCTGCAGGCTCTCACAGGTTATGCTCAACCCGGCAACCTTCTCGCTATAATGGGCCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCCTTATCAGGGAGATTAAGCTCTAGCGTGAAACAGACTGGTAAAATTTTAATCAATGGCCACAAACAAGCACTTGCTTATGGAACTTCGGGATATGTAGCACAAGATGATGCTATGCTGTCAACTTTAACCGCCGGGGAAACTTTATACTACTCAGCTCAGCTCCAGTTTCCAGATTCCATGTCCTGTGCTGAGAAGAAGGAAAGAGCTGATATAACACTCAGGGAAATGGGTCTGCAAGATGCCATTAACACAAGGGTTGGAGGATGGGGTTCTAAAGGCCTAAGTGGAGGACAAAAGAGGAGACTCAGCATCTGCATTGAGATCCTAACACGCCCAAAGCTTCTGTTTCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCCTCCTATTATGTCATGAAAAGGATTGCAAGCCTAAGCCTAAGGGATGGCATCCAAAGAACTATTATTGCATCAATCCATCAACCTAGTAGTGAAGTCTTTGAACTCTTCCATGATCTCTGTCTTCTATCTTCTGGCCAAACAGTATATTTTGGTCAAGCATCTGATGCAAATCAGTTTTTTGCTTCAAATGGCTTTCCTTGCCCAGCTCTCCACAATCCCTCTGATCATTTCTTAAGGATCATAAACAAAGATTTTGACCAAGATGTTGAAGAAGGTTTTGGATCAGGAGTTACTGCTGAAGTAGCAATTGACATCCTTGTAAAGTCCTATGGATCATCTGAAACTAAAAACCAAGTTAAGAATGTAGTGGCAACAATAAGCGAAAATAATAAAGGAGCAATTGGGAAGAAGAGAGTCAATGCCGCATTCCTCACTCAGTGCCTCGTTCTTATGAGAAGATCCTCACTGCGATTGTTTCGCGACTTGAGCAATTACTGGCTACTTCTTGTTGTCTTTATTGCAGTAGCTATTAGCATGGGTTCCATGTTCTATAACATTGGCTCAAGTAATGGATCAATTCAAGTATTTGAACGAGAGAGACTAAATGGTCACTATGGTATTATTGCTTTTCTCACAGGCAAAATATTCTCAGCTCTTCCATATATGCTATTGATTTCTCTGATTCCTGGAGGAATTATATATTACCTCTCAGGGCTGCAGAGAGGTTTAGAAAACTTTGTGTACTTTGCTGCTGTTCTATTCGCCATTGTGCTTTGGGTTGAGAGCCTCATGATGGTTGTAGGGAGCATGTTCCCCAATTTCGTCGCCGGCATGAGCATTGCCGGCGGAATTCAAGGACTAACCATCTTAACTGGTGGATTCTACAGGCTGCCAAATGATCTTCCAAAACCATTTTGGAAATACCCCTTTTACTACATTTCTTTCCTCAAGTATGCTTTCCAAGGATCTTTCAAGAATGAATTTGAAGGCTTAACATTTTCCTTGGAACAAGGTGGAAGTGGGAAAACCATTGTTAGTGGTAGAGACATTTTGACAAAAACATGGCAGATGGAAATGGGGCATTCGAAGTGGGTTGATCTTGGCATCATGTTTGGGATGATTGTTCTTTATAGGGTTGTGTTCTTGGCAATCACAAAAAGCAAGGAGAAGTTGAAACCTGTTGTTGCTTCCATTAACAATCCTCAAACAAAAGTTTTCACAAGAGGGATTAGAATTAATGATAGAGCAAGTCCCGTATCTGAAAACCATGGCATCTAG 1848 0.4183 MGGTQGEEKEEVTLTWENLWVTVADGKKRKPILQALTGYAQPGNLLAIMGPSGCGKSTLLDALSGRLSSSVKQTGKILINGHKQALAYGTSGYVAQDDAMLSTLTAGETLYYSAQLQFPDSMSCAEKKERADITLREMGLQDAINTRVGGWGSKGLSGGQKRRLSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRIASLSLRDGIQRTIIASIHQPSSEVFELFHDLCLLSSGQTVYFGQASDANQFFASNGFPCPALHNPSDHFLRIINKDFDQDVEEGFGSGVTAEVAIDILVKSYGSSETKNQVKNVVATISENNKGAIGKKRVNAAFLTQCLVLMRRSSLRLFRDLSNYWLLLVVFIAVAISMGSMFYNIGSSNGSIQVFERERLNGHYGIIAFLTGKIFSALPYMLLISLIPGGIIYYLSGLQRGLENFVYFAAVLFAIVLWVESLMMVVGSMFPNFVAGMSIAGGIQGLTILTGGFYRLPNDLPKPFWKYPFYYISFLKYAFQGSFKNEFEGLTFSLEQGGSGKTIVSGRDILTKTWQMEMGHSKWVDLGIMFGMIVLYRVVFLAITKSKEKLKPVVASINNPQTKVFTRGIRINDRASPVSENHGI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242637g00003 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 249 IPR027417 -
Stsc242637g00003 615 ProSitePatterns ABC transporters family signature. 156 170 IPR017871 GO:0005524|GO:0016887
Stsc242637g00003 615 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 8 384 - -
Stsc242637g00003 615 Pfam ABC-2 type transporter 384 518 IPR013525 GO:0016020|GO:0140359
Stsc242637g00003 615 Pfam ABC transporter 35 184 IPR003439 GO:0005524
Stsc242637g00003 615 FunFam ABC transporter G family member 11 12 299 - -
Stsc242637g00003 615 CDD ABCG_EPDR 12 241 - -
Stsc242637g00003 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 259 IPR003439 GO:0005524
Stsc242637g00003 615 Gene3D - 3 254 IPR027417 -
Stsc242637g00003 615 Pfam ABC-2 type transporter 216 276 IPR043926 GO:0140359
Stsc242637g00003 615 SMART AAA_5 42 235 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242637g00003 Stsc-Chr242637 7427 10037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242637g00003 43 220 Calmodulin-binding Proteins AT2G36910 31.351 2.24e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242637g00003 K05681 - gmx:100790102 907.901