Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242637g00002 ATGGATGATTTCTTTGCTCCACGTCCACTACTACTTCAACGTGCTGCTAGTGACTCTAGTTACTTCTATGAAACCAGACATGCAGCCACCAGAGACACCTCATCATCATCATCAAAATTGTCACAAATAATAAGGCAGCAGCAAAATGTTGTACTAGAGATGGTTGATGAGACCACCACCACCACCACAAGAAACAGTATTATTAATAAGGGTGTGTGTTTGACATGGAAGGATGTGTGGGTGACAGTTAAAAATGGAAGCAGAGTAATACTTGAGGGTGTCACTGGATATGCCAAACCAGGCCAACTCTTAGCCATAATGGGTCCTTCTGGCTCTGGCAAGTCCACTCTTCTTGATACTTTAGCAGGGAGATTGGGTGCAGACACACACCAAAACGGGGAGATTCTGATCAACGGTCAAAAACGATCACTGGCTTATGGAACCTCGGCATACGTGACACAAGATGATACCTTGTTGACAACCTTAACGGTGAGAGAAGCAGTGCACTATTCAGCTCAACTCCAACTTCCTGATTCAATGTCAAAGGCAGAGAAGAAAGAGAGAGCAGACTTCACAATAAGAGAGATGGGTTTGCAAGATGCCATGGACACTAGAATTGGAGGTTGGGGTTGCAAAGGGATCAGCGGTGGTCAGAAGAGGCGTGTCAGCATCTGCATTGAGATACTAACACGCCCAAAGCTTCTGTTTCTTGATGAGCCAACAAGTGGACTTGACAGTGCTGCCTCTTATTATGTCATGAAAACAATTAAATCCCAGCTGGATCGTAAAGATGGCGTTAAAAGGACTGCTATTGCTTCAATTCATCAGCCAAGTGCTGAAGTTTTCCAATTTTTTGATAATCTCTGTCTGCTATCTGCTGGCAAAACAGTTTACTTTGGTCCTGCTTCTGCTGCAATAGAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCCACTCTCCAGAATCCATCTGATCATTTACTGAAAACTATAAACAAGGACTTTGATAAGGACACTGAGGTGGGTTTAGCTGAAATGGGAACAATACCTGCAGAAGAAGCAATTAGAATCCTTGTGAAGTCTTATAAATCATCTGACATTAGAAAACAAGTCCAACAAGAAGTGGAACAACTATCTCAGAAGGGGAACAGTTCAATAGTAGAGAAGGAGAAAGGGCAAGCTGGCTTCCTGAATCAGTGCATAGTTTTGACCAAAAGATCTTATGTGAACATGTTTAGAGATTTAGGGTACTACTGGTTACGCCTTGCCATATATATTTTCTTGGCTACATGTTTAGGGACTATATACCATGATTTGGGTACAGCTTATGGCTCAATTAAGGATAGAGCTTCACTCCTTACGTTTGTGTCTTCCTTTATAACTTTCATGAGTATCGGTGGATTCCCTTCCTTTGTCGAGGTCATGAAGGTATTTCAGCGAGAAAGACTAAATGGGCACTATGGTGTTACAACATTTGTGATTGGTGACAGCATTTCAAGCATCCCTTTCTTGTTCCTGAATTCAATAATTCCAGGAGTCATAGCATATTACCTAGTCGGTCTTCAACGTGGATTTGGCCACTTTGTGTACTTCATCTGTGTCTTATTTTCTTGTTTAACTTTAGTAGAAAGCCTTATGATGATTGTTGCAAGCATCGTCCCTAACTTCCTAATGGGAATCATAACCGGTTCTGGAATCCAAGGAATCATGATGCTAACTGGAGGATTCTTCAAGTTGCCAGATGACCTTCCTAAGCCATTTTGGAGATACCCTATGTTCTATGTCTCTTTTCATAGATATGCATTCCAAGGCTTGTACAAGAACGAGTTTGAAGGACTGAGTTTTCCTTCAAACCAAGGGATGAGGACACGAATTAGTGGTGAAGAGGTTCTAAGGACCACATGGGAAGTTGACTTGACTTATTCAAAGTGGGTTGATTTTGCAATCTTGCTTGGGATGATTTTTGTCTACAGGGTCCTCTTCTTGCTTATCATCAAAACTACTGAGAAATTGAAGCCCATTGTTTTCTCATTAATGTCAAAGCAAACAACACAGGTCATGGAGGCTCCTAATACCACTCCTTTCCATACTTAG 2091 0.4161 MDDFFAPRPLLLQRAASDSSYFYETRHAATRDTSSSSSKLSQIIRQQQNVVLEMVDETTTTTTRNSIINKGVCLTWKDVWVTVKNGSRVILEGVTGYAKPGQLLAIMGPSGSGKSTLLDTLAGRLGADTHQNGEILINGQKRSLAYGTSAYVTQDDTLLTTLTVREAVHYSAQLQLPDSMSKAEKKERADFTIREMGLQDAMDTRIGGWGCKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKTIKSQLDRKDGVKRTAIASIHQPSAEVFQFFDNLCLLSAGKTVYFGPASAAIEFFASNGFPCPTLQNPSDHLLKTINKDFDKDTEVGLAEMGTIPAEEAIRILVKSYKSSDIRKQVQQEVEQLSQKGNSSIVEKEKGQAGFLNQCIVLTKRSYVNMFRDLGYYWLRLAIYIFLATCLGTIYHDLGTAYGSIKDRASLLTFVSSFITFMSIGGFPSFVEVMKVFQRERLNGHYGVTTFVIGDSISSIPFLFLNSIIPGVIAYYLVGLQRGFGHFVYFICVLFSCLTLVESLMMIVASIVPNFLMGIITGSGIQGIMMLTGGFFKLPDDLPKPFWRYPMFYVSFHRYAFQGLYKNEFEGLSFPSNQGMRTRISGEEVLRTTWEVDLTYSKWVDFAILLGMIFVYRVLFLLIIKTTEKLKPIVFSLMSKQTTQVMEAPNTTPFHT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242637g00002 696 Pfam ABC transporter 92 242 IPR003439 GO:0005524
Stsc242637g00002 696 Pfam ABC-2 type transporter 275 331 IPR043926 GO:0140359
Stsc242637g00002 696 Gene3D - 72 341 IPR027417 -
Stsc242637g00002 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 310 IPR027417 -
Stsc242637g00002 696 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 57 685 - -
Stsc242637g00002 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 318 IPR003439 GO:0005524
Stsc242637g00002 696 Pfam ABC-2 type transporter 398 609 IPR013525 GO:0016020|GO:0140359
Stsc242637g00002 696 SMART AAA_5 100 295 IPR003593 GO:0016887
Stsc242637g00002 696 FunFam ABC transporter G family member 11 72 360 - -
Stsc242637g00002 696 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242637g00002 Stsc-Chr242637 2896 5852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242637g00002 98 287 Calmodulin-binding Proteins AT2G36910 28.643 8.69e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242637g00002 K05681 - gmx:100813462 928.317