Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242635g00001 ATGGCCGATGCTTCCTTTGAGAGTGAGACGGAGTATTATACCCCAAACCATCAGAAACGATACTATCCAACGCCAATGAGTCATCACGACGTATTTGGCACGGAGTCGTCTTTCACGATGTCCAGCTCTCAAACTCAAAGCAAAGCCACCAGCTCTAGAAGAACTCGCCCCAACAGAATTCCGGCTACGCCTTTCGCTTCGGACGATGATCAATCGTGGCAAGGAGAGGTTTCTTGGAAGTTCGAGGCCAGGGGATGGCATGAGTACAGCGCAAGCATGGGTTCTGTTCTGAATCCATGGCCAGCCGACTCCCCATTCGAACACAGCCGCGTGTTTCGCCGGTCGGCCAATGACTACTTCCTATCACAAACTAGTCGATTCAAAGGCCAGTCTGACTCAACTTATCATAATGAGCATTCTGACTACGGAAGAGTTGAGCTACAGAGCTATATCGCTCGTGACAGTGACCATTTCGAGTCTCGTAGTTTCTCTAAGAGGAAGGTCATGAAAGAAAGGGAAAGCATAAGAGACAAGACTAGTCCATTGGCCGAAGAAGACGAGCTCAGTTGGATAGACTATAGCATCTCAGATAAAGAAATTGGTGGGCATCACGCTGAGTTCTCATATACTGATAAACATGATCACCGTGGCAATTATGGTGACAGTTACGTAATACCATCACGTGGCGATAGATTCGGTACCCCGAGTTATGGTGTTGACAAGGTTCCAGGGTATGAATATGATGAAGAAGGTGAGGAGGAATTGGACGAGGAAGATGCAGGGCCTCCAAAGACAATCGGATTGTTTGGGTTATTTAGGTATGCAACAAAGTGGGATTGGATTCTTGTGCTTGTAGGTTGTTTAGGGGCTTTCATAGATGGAGGCTCACTTCCTTTTTATTCTTATCTTTTTGGAGAATTGGTCAATAAGATTTCACAAAATGGGAATAATAAGCAAATGATGAAGGATGTAGAGAAGATATGCATATATATGACCGGGTTGGCTGCAGTTGTTTTGGTTGGAGCATATTTACAGATCGCATGTTGGAGGTTAGTGGGCGAGAGATCTGCTCAAAGAATGAGGACACAGTATTTAAGAGCAGTTCTTCGACAGGACATTAGCTTTTTTGATACAGAGATCAACACTGGGGACATCATGCATGGAATTGCAAGTGATGTTGCCCAAATCCAAGAAGTTATGGGAGAAAAGATGGCTCACTTTGTTCATCATATATTTACATTTATATGTGGCTACATAGTTGGATTTAGAAGGTCATGGAGAGTCTCTTTGGTGGTATTCTCGGTCACCCCATTAACAATGTTTTGTGGCATAGTCTACAAAGCAGTTTATGGTGGTCTAACAGCAAAAGAAGAAGCTTCTTACAGGAAAGCTGGTGCTATTGCGGAGCAAACGATCAGTTCTATTAGGACAGTGTTTTCTTTTGTTGCGGAAAGCCAATTGGCTGCAAAATATGCTCAACTACTACAAAAATCTGCCCCAATAGGCGCAAAAATTGGTTTTGCTAAGGGTGCAGGCATGGGCATTATCTATTTAGTAACTTATTCAACATGGGCCTTGGCATTTTGGTATGGCTCTATCTTAATTGCCAAGGACAAACTTGATGGGGGTGCAGCTATTGCTTGTTTCTTTGGTGTCAACGTTGGAGGAAGAGGTCTCGCATTGGCGCTGTCATATTTTGCACAGTTTGCACAGGGTACTGTTGCAGCAAGTCGTGTATTTTCTGTTATAGATAGAATTCCTAAGATTGATCCATATAGCCCTGACGGAAGGAAGCTTACTGTTGTTCGTGGTAGAATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGCCCTGATTCTCTGATACTTCATTCCCTTAATTTGGTCTTTTCATCGGCAAAAACTTTCGCACTGGTTGGTGCTAGTGGAGGGGGCAAGTCAACTATATTTGCTCTCATAGAGAGGTTCTATGACCCGATTGAAGGGACGATAACCTTGGATGGCCATGATTTGAGGACGTTGCAAGTCAAGTGGCTAAGAGGCCAAATTGGGATGGTTGGTCAAGAGCCAATTCTATTTGCCACATCCATATTGGAAAACGTGATGATGGGGAAAGATAATGTCACTAAGGAGGAGGCAATTGCTGCGTGCATTGCTGCAGATGCTCACGGTTTCATATCTAACTTACCACTTGACTATGACACTCAGAGTTTACAGGTCGGAGATAGGGGCACAAAACTATCGGGTGGTCAAAAGCAGAGAATCGCACTGGCTCGAGCAATAATCAAAGATCCTAAAATTCTTCTTTTAGATGAACCTACCAGCGCTCTTGATGCTGAGTCAGAGGCTGCAGTCCAACGAGCCATCGACAAGATTTCTGCAGGTCGAACAACCATTGTCATTGCTCACAGGATAGCTACTGTGAAGAATGCCCATGCCATCGTGGTCCTTGAAAATGGTACTGCCATTGAGATAGGTGACCATCGCCAGCTTATGGGAAAAGGTGGAACCTACTCTAACCTTGTCAAACTCGCTACTGAGGCCATATCAAAGCCTCTCTCTAATGAAAATGACATGCAAAAATCCAATGATCTTGCTATTCATGACAAATCAATTGCTGATGTATCAAGATACGTAGCAGATATCTCAAGGCCTAAACAGATAAAATACGCTCAGGAGGAAAAAGGTGTAGAGATGGAAGATGAGCCAAAAAAATTTAGACTTTCTGACATAATGAAATTGCAAAAGCCTGAGCTTTGGATGCTACTTTTAGGATTCTTTCTGGGCATGTTTGCAGGCGCTTTTCTATCTCTTTTTCCTTTGGTTTTAGGCATATCTCTTGGAGTATATTTTGACGATGACACTGATAAGATGAAGAGAGATGTTGGACACCTTTGTTTAGCACTTGTGTGTCTTGGATTCGGTTGTATTCTTTTCATGACAGGACAACAAGGCTTTTGTGGTTGGGCAGGATCAAAGCTAACATTAAGGGTTAGAAACCTCTTGTTCCAGTCCATCTTGAAACAAGAACCTGGATGGTTTGATTTTGATAAAAACTCGACTGGAGTGTTAGTGTCAAGGCTCTCCATAGATTGTGTCAGCTTTCGTTCAATACTTGGTGATCGATTATCAGTCCTTCTTATGGGGTTGAGTTCAGCAGCCGTCGGTCTTAGTGTTTCCTTTGTCATCAATTGGAAACTAACCCTTTTGGCGGCAGCTGTTACTCCCTTTACTCTTGGTGCAAGCTATGTAAGCTTGCTTATAAATATTGGGCCACAAGTTGATAACAATGCATATGCCAAAGCTAGCAATATTGCTTCTGGTGCAGTGGCAAACATAAGAACGGTTACTACATTTTCTGCCCAGGAACAATTACTAAAGTCCTTTGATCAAGCCTTATCAGAACCTCGAAGGAAATCATTGAGAAGTTCGCACATTCAAGGTCTGACATTTGGATTCTTTCAAGGTGCCATGTATGGAGCGTACACCCTGGTTCTTTGGTTTGGTGTCAGACTTGTAGATCGTGACGAAGCCAAGTTCGGACATGTTTTTAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCTGTGGGACAGCTGGCTGGTTTAGCACCAGATACTTCTATGGCAGCCACAGCAATCCCCTCTGTTCAAAATATCATAAACCGGAGGCCACTGATAGGCAACGATAAGCCAAAAAGAAGCAAGAAAGTAGATGATCGATCAAAGTCGTCTTTCAAAATAGAATTCAAAATGGTCACATTTGCATACCCATCTAGGCCTACTGTGATAGTGCTAAGGGATTTCTCTTTGAAGAGGTTCTATGATCCAAATAAAGGAAAAGTGATGCTAGGTGGTGTAGACCTTAAGGAAATTGATGTTAAGTGGTTACGGAGACAAATGGCTTTAGTAGGTCAAGAACCAGCACTGTTTTCTGGGAGTATAAGGGAGAACATTACTTTTGGGGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCAGCAAAAGAAGCTTACATTCACAAATTCATTAGTGGGCTTCCTCAAGGCTACGAGACCCAGGTTGGTCAAAGCGGGGTCCAACTATCAGGTGGCCAGAAACAAAGAATTGCAATAGCAAGGGCCATACTGAAGAAATCAAGGGTTCTTCTACTTGATGAAGCAAGCAGTGCTTTGGACTTGGAGTCTGAGAAACACATCCAAGATGCCCTCAAAAAAGTTTCCAAGGAAGCAACAACCATAATTGTAGCCCATCGTCTATCCACAATTAAAGAAGCTGACAACATAGTGGTTATGAAAGATGGGGGAGTGGCAGAGTATGGAAGTCATGATACACTCATGACTTCCCATCAAAGTGGTCTGTATGCTAGCCTAGTTCGTTCTGAGACCGAAGCCAATGCCTTTGCTTGA 4413 0.4315 MADASFESETEYYTPNHQKRYYPTPMSHHDVFGTESSFTMSSSQTQSKATSSRRTRPNRIPATPFASDDDQSWQGEVSWKFEARGWHEYSASMGSVLNPWPADSPFEHSRVFRRSANDYFLSQTSRFKGQSDSTYHNEHSDYGRVELQSYIARDSDHFESRSFSKRKVMKERESIRDKTSPLAEEDELSWIDYSISDKEIGGHHAEFSYTDKHDHRGNYGDSYVIPSRGDRFGTPSYGVDKVPGYEYDEEGEEELDEEDAGPPKTIGLFGLFRYATKWDWILVLVGCLGAFIDGGSLPFYSYLFGELVNKISQNGNNKQMMKDVEKICIYMTGLAAVVLVGAYLQIACWRLVGERSAQRMRTQYLRAVLRQDISFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFVHHIFTFICGYIVGFRRSWRVSLVVFSVTPLTMFCGIVYKAVYGGLTAKEEASYRKAGAIAEQTISSIRTVFSFVAESQLAAKYAQLLQKSAPIGAKIGFAKGAGMGIIYLVTYSTWALAFWYGSILIAKDKLDGGAAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFSVIDRIPKIDPYSPDGRKLTVVRGRIELKNVSFAYPSRPDSLILHSLNLVFSSAKTFALVGASGGGKSTIFALIERFYDPIEGTITLDGHDLRTLQVKWLRGQIGMVGQEPILFATSILENVMMGKDNVTKEEAIAACIAADAHGFISNLPLDYDTQSLQVGDRGTKLSGGQKQRIALARAIIKDPKILLLDEPTSALDAESEAAVQRAIDKISAGRTTIVIAHRIATVKNAHAIVVLENGTAIEIGDHRQLMGKGGTYSNLVKLATEAISKPLSNENDMQKSNDLAIHDKSIADVSRYVADISRPKQIKYAQEEKGVEMEDEPKKFRLSDIMKLQKPELWMLLLGFFLGMFAGAFLSLFPLVLGISLGVYFDDDTDKMKRDVGHLCLALVCLGFGCILFMTGQQGFCGWAGSKLTLRVRNLLFQSILKQEPGWFDFDKNSTGVLVSRLSIDCVSFRSILGDRLSVLLMGLSSAAVGLSVSFVINWKLTLLAAAVTPFTLGASYVSLLINIGPQVDNNAYAKASNIASGAVANIRTVTTFSAQEQLLKSFDQALSEPRRKSLRSSHIQGLTFGFFQGAMYGAYTLVLWFGVRLVDRDEAKFGHVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPSVQNIINRRPLIGNDKPKRSKKVDDRSKSSFKIEFKMVTFAYPSRPTVIVLRDFSLKRFYDPNKGKVMLGGVDLKEIDVKWLRRQMALVGQEPALFSGSIRENITFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGQSGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQDALKKVSKEATTIIVAHRLSTIKEADNIVVMKDGGVAEYGSHDTLMTSHQSGLYASLVRSETEANAFA 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242635g00001 1470 CDD ABC_6TM_Pgp_ABCB1_D1_like 284 579 - -
Stsc242635g00001 1470 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1097 1237 - -
Stsc242635g00001 1470 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524|GO:0016887
Stsc242635g00001 1470 Pfam ABC transporter transmembrane region 923 1194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242635g00001 1470 Pfam ABC transporter transmembrane region 284 552 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242635g00001 1470 Pfam ABC transporter 1272 1390 IPR003439 GO:0005524
Stsc242635g00001 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1245 1461 IPR027417 -
Stsc242635g00001 1470 Pfam ABC transporter 624 776 IPR003439 GO:0005524
Stsc242635g00001 1470 MobiDBLite consensus disorder prediction 30 58 - -
Stsc242635g00001 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 844 IPR027417 -
Stsc242635g00001 1470 CDD ABC_6TM_Pgp_ABCB1_D2_like 913 1228 - -
Stsc242635g00001 1470 Gene3D - 1240 1469 IPR027417 -
Stsc242635g00001 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 606 845 IPR003439 GO:0005524
Stsc242635g00001 1470 Gene3D ABC transporter type 1, transmembrane domain 270 1214 IPR036640 GO:0005524|GO:0016020
Stsc242635g00001 1470 SUPERFAMILY ABC transporter transmembrane region 901 1226 IPR036640 GO:0005524|GO:0016020
Stsc242635g00001 1470 CDD ABC_MTABC3_MDL1_MDL2 606 846 - -
Stsc242635g00001 1470 ProSitePatterns ABC transporters family signature. 1363 1377 IPR017871 GO:0005524|GO:0016887
Stsc242635g00001 1470 Gene3D - 596 847 IPR027417 -
Stsc242635g00001 1470 SUPERFAMILY ABC transporter transmembrane region 265 591 IPR036640 GO:0005524|GO:0016020
Stsc242635g00001 1470 MobiDBLite consensus disorder prediction 1 71 - -
Stsc242635g00001 1470 FunFam ABC transporter B family member 1 596 847 - -
Stsc242635g00001 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242635g00001 1470 FunFam ABC transporter B family member 25 1271 1465 - -
Stsc242635g00001 1470 SMART AAA_5 633 837 IPR003593 GO:0016887
Stsc242635g00001 1470 SMART AAA_5 1186 1437 IPR003593 GO:0016887
Stsc242635g00001 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1216 1460 IPR003439 GO:0005524
Stsc242635g00001 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc242635g00001 1470 PANTHER ABC TRANSPORTER B FAMILY 249 845 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242635g00001 Stsc-Chr242635 2728 11978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242635g00001 954 1470 Calmodulin-binding Proteins AT2G36910 33.272 1.49e-84 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242635g00001 K05658 - gmx:100816700 2100.48