Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242627g00002 ATGACCACCTGTTTTCCTTTCTTCTTCAGTAAGGTCTCATCTTCAGCAAGACAAGAATCACACCCAAACACTGATGAAGATTTATCTGGTCTTCAACATGTTAGACTTTACACATACAAAGAACTAAGAAAGGCAACTGATGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGATTTGGTTCTGTCTATAAGGGACGGCTTAAAGATGGAAAACTTGGTGCTGTAAAAGTTCTTTCAGCAGAATCCAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATATCAGAAATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAATTATCTTGAGAATGCCAGTCTTGCACAAACTCTTCTAGTTGGAAATCACACTAACCTTCTCTTCAATTGGCAAACTCGATGTAAAATAAGCATTGGGATCGCACGCGGGCTAGCATTTCTTCATGAGGAAGTAAGGCCTCATATTGTTCATAGAGATATAAAAGCAAGTAATATTCTACTCGACCGAGATCTTACTCCCAAGATTTCGGATTTCGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACGCGAGTAGCCGGAACATTAGGTTATTTGGCACCGGAATATGCAATAGGCGGGAAGCTGACGCGAAAAGCCGACATTTACAGTTTCGGTGTTCTCCTGGTTGAGATAGTTTGTGGAACATGTAACGTAAATTCAAGATTACCTATGGAAGAACAATTTCTCCTAGAAAGGACATGGGATCTTTACGAGCGAAACGAATTGGTAGCACTCGTAGACATAACGCTAAACGGAAAATTCGATGCCGAGCAGGCCTGTAAGTTCCTCAAGATTGGCCTTCTTTGCACTCAAGACTCCCCAAGGCTGCGGCCGCCGATGTCTTCGGTAGTAAAGATGCTCACCGGAGAAATGGCTGTTGATGACAGCAAGATAACAAAACCAGCCTTAATTACTGATATTATGGACCTTAAAGTTAGAAAGAAGCAGGGGATTAATAATTCTGATATGAAGACAGCATCTACATACAACACAAACAACACATCTTCACTGGGTAGTGCTGCTAGCACCATGTCATTGTCATCATCTCCTTCTACTGCTATAACTACTTCAACCTTCACTGCAAGATGTGATCAAAGCATGTAG 1203 0.4098 MTTCFPFFFSKVSSSARQESHPNTDEDLSGLQHVRLYTYKELRKATDDFSPANKIGEGGFGSVYKGRLKDGKLGAVKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLENASLAQTLLVGNHTNLLFNWQTRCKISIGIARGLAFLHEEVRPHIVHRDIKASNILLDRDLTPKISDFGLAKLIPANMTHVSTRVAGTLGYLAPEYAIGGKLTRKADIYSFGVLLVEIVCGTCNVNSRLPMEEQFLLERTWDLYERNELVALVDITLNGKFDAEQACKFLKIGLLCTQDSPRLRPPMSSVVKMLTGEMAVDDSKITKPALITDIMDLKVRKKQGINNSDMKTASTYNTNNTSSLGSAASTMSLSSSPSTAITTSTFTARCDQSM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242627g00002 400 CDD STKc_IRAK 55 322 - -
Stsc242627g00002 400 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242627g00002 400 Gene3D Transferase(Phosphotransferase) domain 1 125 336 - -
Stsc242627g00002 400 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 360 - -
Stsc242627g00002 400 FunFam cold-responsive protein kinase 1 125 336 - -
Stsc242627g00002 400 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242627g00002 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Stsc242627g00002 400 FunFam cold-responsive protein kinase 1 19 124 - -
Stsc242627g00002 400 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Stsc242627g00002 400 Pfam Protein kinase domain 52 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242627g00002 400 Gene3D Phosphorylase Kinase; domain 1 19 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242627g00002 Stsc-Chr242627 15512 20994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242627g00002 25 374 Receptor kinase-like Gene Family AT1G53430 50.142 1.50e-107 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242627g00002 Pkinase 5.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242627g00002 - - gmx:100782320 585.104